On-chip Crystallization and Large-Scale Serial Diffraction at Room Temperature

被引:3
|
作者
Biju, Linta M. [1 ]
Wang, Cong [1 ]
Kang, Weijia [1 ]
Tom, Irin P. [1 ]
Kumarapperuma, Indika [1 ]
Yang, Xiaojing [1 ,2 ]
Ren, Zhong [1 ,3 ]
机构
[1] Univ Illinois, Dept Chem, Chicago, IL 60680 USA
[2] Univ Illinois, Dept Ophthalmol & Vis Sci, Chicago, IL 60607 USA
[3] Renz Res Inc, Chicago, IL 60607 USA
来源
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
PROTEIN CRYSTALLIZATION; SITU; CRYSTALLOGRAPHY; PLATFORM; PLATE;
D O I
10.3791/63022
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Biochemical reactions and biological processes can be best understood by demonstrating how proteins transition among their functional states. Since cryogenic temperatures are non-physiological and may prevent, deter, or even alter protein structural dynamics, a robust method for routine X-ray diffraction experiments at room temperature is highly desirable. The crystal-on-crystal device and its accompanying hardware and software used in this protocol are designed to enable in situ X-ray diffraction at room temperature for protein crystals of different sizes without any sample manipulation. Here we present the protocols for the key steps from device assembly, on-chip crystallization, optical scanning, crystal recognition to X-ray shot planning and automated data collection. Since this platform requires no crystal harvesting nor any other sample manipulation, hundreds to thousands of protein crystals grown on chip can be introduced into an X-ray beam in a programmable and high-throughput manner.
引用
收藏
页数:16
相关论文
共 50 条
  • [1] Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction
    Heymann, Michael
    Opthalage, Achini
    Wierman, Jennifer L.
    Akella, Sathish
    Szebenyi, Doletha M. E.
    Gruner, Sol M.
    Fraden, Seth
    IUCRJ, 2014, 1 : 349 - 360
  • [2] An Analysis of On-Chip Interconnection Networks for Large-Scale Chip Multiprocessors
    Sanchez, Daniel
    Michelogiannakis, George
    Kozyrakis, Christos
    ACM TRANSACTIONS ON ARCHITECTURE AND CODE OPTIMIZATION, 2010, 7 (01)
  • [3] On-chip crystallization for serial crystallography experiments and on-chip ligand-binding studies
    Lieske, Julia
    Cerv, Maximilian
    Kreida, Stefan
    Komadina, Dana
    Fischer, Janine
    Barthelmess, Miriam
    Fischer, Pontus
    Pakendorf, Tim
    Yefanov, Oleksandr
    Mariani, Valerio
    Seine, Thomas
    Ross, Breyan H.
    Crosas, Eva
    Lorbeer, Olga
    Burkhardt, Anja
    Lane, Thomas J.
    Guenther, Sebastian
    Bergtholdt, Julian
    Schoen, Silvan
    Tornroth-Horsefield, Susanna
    Chapman, Henry N.
    Meents, Alke
    IUCRJ, 2019, 6 : 714 - 728
  • [4] On-chip and inter-chip networks for modelling large-scale neural systems
    Furber, Steve
    Temple, Steve
    Brown, Andrew
    2006 IEEE INTERNATIONAL SYMPOSIUM ON CIRCUITS AND SYSTEMS, VOLS 1-11, PROCEEDINGS, 2006, : 1945 - 1948
  • [5] Large-Scale Inverse Design of a Planar On-Chip Mode Sorter
    Di Domenico, Giuseppe
    Weisman, Dror
    Panichella, Annibale
    Roitman, Dolev
    Arie, Ady
    ACS PHOTONICS, 2022, 9 (02) : 378 - 382
  • [6] Design and Analysis of On-Chip Networks for Large-Scale Cache Systems
    Jin, Yuho
    Kim, Eun Jung
    Yum, Ki Hwan
    IEEE TRANSACTIONS ON COMPUTERS, 2010, 59 (03) : 332 - 344
  • [7] Room-temperature serial crystallography using a kinetically optimized microfluidic device for protein crystallization and on-chip X-ray diffraction (vol 1, pg 349, 2014)
    Heymann, Michael
    Opathalage, Achini
    Wierman, Jennifer L.
    Akella, Sathish
    Szebenyi, Doletha M. E.
    Gruner, Sol M.
    Fraden, Seth
    IUCRJ, 2015, 2 : 601 - 601
  • [8] Darwin3: a large-scale neuromorphic chip with a novel ISA and on-chip learning
    Ma, De
    Jin, Xiaofei
    Sun, Shichun
    Li, Yitao
    Wu, Xundong
    Hu, Youneng
    Yang, Fangchao
    Tang, Huajin
    Zhu, Xiaolei
    Lin, Peng
    Pan, Gang
    NATIONAL SCIENCE REVIEW, 2024, 11 (05)
  • [9] Darwin3: a large-scale neuromorphic chip with a novel ISA and on-chip learning
    De Ma
    Xiaofei Jin
    Shichun Sun
    Yitao Li
    Xundong Wu
    Youneng Hu
    Fangchao Yang
    Huajin Tang
    Xiaolei Zhu
    Peng Lin
    Gang Pan
    National Science Review, 2024, 11 (05) : 29 - 45
  • [10] An Accurate on-Chip Design Estimation for Mitigating EMI Effects in a Large-Scale Integration Chip
    Moon, Sungwook
    Kim, Jinho
    Lee, Jihyun
    Kim, Taeyong
    Kim, Kyongho
    2015 IEEE 65TH ELECTRONIC COMPONENTS AND TECHNOLOGY CONFERENCE (ECTC), 2015, : 757 - 761