Concordance of residual dipolar couplings, backbone order parameters and crystallographic B-factors for a small α/β protein:: A unified picture of high probability, fast atomic motions in proteins

被引:99
|
作者
Clore, GM
Schwieters, CD
机构
[1] NIDDKD, Chem Phys Lab, NIH, Bethesda, MD 20892 USA
[2] NIH, Div Computat Biosci, Bethesda, MD 20892 USA
关键词
protein dynamics; residual dipolar couplings; multiple alignment media; relaxation order parameters; crystallographic B-factors;
D O I
10.1016/j.jmb.2005.11.042
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Using ensemble refinement of the third immunoglobulin binding domain (GB3) of streptococcal protein G (a small alpha/beta protein of 56 residues), we demonstrate that backbone (N-H, N-C', C-alpha-H-alpha-, C-alpha-C') residual dipolar coupling data in five independent alignment media, generalized order parameters from N-15 relaxation data, and B-factors from a high-resolution (1.1 angstrom), room temperature crystal structure are entirely consistent with one another within experimental error. The optimal ensemble size representation is between four and eight, as assessed by complete cross-validation of the residual dipolar couplings. Thus, in the case of GB3, all three observables reflect the same low-amplitude anisotropic motions arising from fluctuations in backbone phi/psi torsion angles in the picosecond to nanosecond regime in both solution and crystalline environments, yielding a unified picture of fast, high-probability atomic motions in proteins. An understanding of these motions is crucial for understanding the impact of protein dynamics on protein function, since they provide part of the driving force for triggered conformational changes that occur, for example, upon ligand binding, signal transduction and enzyme catalysis. Published by Elsevier Ltd.
引用
收藏
页码:879 / 886
页数:8
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    POWERS, R
    CLORE, GM
    GARRETT, DS
    GRONENBORN, AM
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