Standards and ontologies in computational systems biology

被引：17
|
作者：
Sauro, Herbert A. [1 ]
Bergmann, Frank T. [1 ]
机构：
[1] Dept Bioengn, Seattle, WA 98195 USA
来源：
ESSAYS IN BIOCHEMISTRY: SYSTEMS BIOLOGY, VOL 45 | 2008年 / 45卷
基金：
日本科学技术振兴机构;
关键词：
D O I：
10.1042/BSE0450211
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
With the growing importance of computational models in systems biology there has been much interest in recent years to develop standard model interchange languages that permit biologists to easily exchange models between different software tools. In the present chapter two chief model exchange standards, SBML (Systems Biology Markup Language) and CellML are described. In addition, other related features including visual layout initiatives, ontologies and best practices for model annotation arc discussed. Software tools such as developer libraries and basic editing tools arc also introduced, together with a discussion on the future of modelling languages and visualization tools In systems biology.
引用
收藏
页码：211 / 222
页数：12
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