3D Convolutional Networks-Based Mitotic Event Detection in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations

被引:23
|
作者
Nie, Wei-Zhi [1 ]
Li, Wen-Hui [1 ]
Liu, An-An [1 ]
Hao, Tong [2 ]
Su, Yu-Ting [1 ]
机构
[1] Tianjin Univ, Sch Elect Informat Engn, Tianjin, Peoples R China
[2] Tianjin Normal Univ, Coll Life Sci, Tianjin Key Lab Anim & Plant Resistance, Tianjin, Peoples R China
关键词
MITOSIS DETECTION; SEGMENTATION;
D O I
10.1109/CVPRW.2016.171
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
In this paper, we propose a straightforward and effective method for mitotic event detection in time-lapse phase contrast microscopy image sequences of stem cell populations. Different from most of recent methods leveraging temporal modeling to learn the latent dynamics within one mitotic event, we mainly target on the data-driven spatio-temporal visual feature learning for mitotic event representation to bypass the difficulties in both robust hand-crafted feature designing and complicated temporal dynamic learning. Specially, we design the architecture of the convolutional neural networks with 3D filters to extract the holistic feature of the volumetric region where individual mitosis event occurs. Then, the extracted features can be directly feeded into the off-the-shelf classifiers for model learning or inference. Moreover, we prepare a novel and challenging dataset for mitosis detection. The comparison experiments demonstrate the superiority of the proposed method.
引用
收藏
页码:1359 / 1366
页数:8
相关论文
共 27 条
  • [1] SPATIOTEMPORAL MITOSIS EVENT DETECTION IN TIME-LAPSE PHASE CONTRAST MICROSCOPY IMAGE SEQUENCES
    Liu, Anan
    Li, Kang
    Kanade, Takeo
    [J]. 2010 IEEE INTERNATIONAL CONFERENCE ON MULTIMEDIA AND EXPO (ICME 2010), 2010, : 161 - 166
  • [2] A Semi-Markov Model for Mitosis Segmentation in Time-Lapse Phase Contrast Microscopy Image Sequences of Stem Cell Populations
    Liu, An-An
    Li, Kang
    Kanade, Takeo
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2012, 31 (02) : 359 - 369
  • [3] MITOSIS DETECTION OF HEMATOPOIETIC STEM CELL POPULATIONS IN TIME-LAPSE PHASE-CONTRAST MICROSCOPY IMAGES
    Huh, Seungil
    Eom, Sungeun
    Ker, Dai Fei Elmer
    Weiss, Lee
    Kanade, Takeo
    [J]. 2012 9TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING (ISBI), 2012, : 390 - 393
  • [4] MitoGen: A Framework for Generating 3D Synthetic Time-Lapse Sequences of Cell Populations in Fluorescence Microscopy
    Svoboda, David
    Ulman, Vladimir
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2017, 36 (01) : 310 - 321
  • [5] Apoptosis Detection for Adherent Cell Populations in Time-Lapse Phase-Contrast Microscopy Images
    Huh, Seungil
    Ker, Dai Fei Elmer
    Su, Hang
    Kanade, Takeo
    [J]. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2012, PT I, 2012, 7510 : 331 - 339
  • [6] Spatio-Temporal Mitosis Detection in Time-Lapse Phase-Contrast Microscopy Image Sequences: A Benchmark
    Su, Yu-Ting
    Lu, Yao
    Liu, Jing
    Chen, Mei
    Liu, An-An
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2021, 40 (05) : 1319 - 1328
  • [7] Spherical Harmonics based extraction and annotation of cell shape in 3D time-lapse microscopy sequences
    Ducroz, Christel
    Olivo-Marin, Jean-Christophe
    Dufour, Alexandre
    [J]. 2011 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2011, : 6619 - 6622
  • [8] 3D lens-free time-lapse microscopy for 3D cell culture
    Berdeu, Anthony
    Momey, Fabien
    Laperrousaz, Bastien
    Bordy, Thomas
    Gidrol, Xavier
    Dinten, Jean-Marc
    Picollet-D'hahan, Nathalie
    Allier, Cedric
    [J]. ADVANCES IN MICROSCOPIC IMAGING, 2017, 10414
  • [9] Multi-Grained Random Fields for Mitosis Identification in Time-Lapse Phase Contrast Microscopy Image Sequences
    Liu, An-An
    Tang, Jinhui
    Nie, Weizhi
    Su, Yuting
    [J]. IEEE TRANSACTIONS ON MEDICAL IMAGING, 2017, 36 (08) : 1699 - 1710
  • [10] Label-free monitoring of spatiotemporal changes in the stem cell cytoskeletons in time-lapse phase-contrast microscopy
    Jiang, Ching-fen
    Sun, Yu-man
    [J]. BIOMEDICAL OPTICS EXPRESS, 2022, 13 (04) : 2323 - 2333