Energy-entropy dispersion relation in DNA sequences

被引:1
|
作者
Nowak, H. [1 ]
Haeussler, P. [2 ]
机构
[1] Univ Nacl Mayor San Marcos, Fac Phys, Lima 0149, Peru
[2] TU Chemnitz, Inst Phys, D-09107 Chemnitz, Germany
关键词
Statistical physics; Dynamics; Complex systems; Genetics; ESCHERICHIA-COLI; VIRUS; PROTEIN;
D O I
10.1016/j.physa.2013.06.018
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
For a number of virus- and bacterium genomes we use the concept of block entropy from information theory and compare it with the corresponding configurational energy, defined via the ionization energies of the nucleotides and a hopping term for their interactions in the sense of a tight-binding model. Additionally to the four-letter alphabet of the nucleotides we discuss a reduction to a two-letter alphabet. We find a well defined relation between block entropy and block energy for a not too large block length which can be interpreted as a generalized dispersion relation for all genome sequences. The relation can be used to look for enhanced interactions between virus and bacterium genomes. Well known examples for virus-virus and virus-bacterium interactions are analyzed along this line. (C) 2013 Elsevier B.V. All rights reserved.
引用
收藏
页码:4688 / 4700
页数:13
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