Identification of Immune-Related Cells and Genes in Tumor Microenvironment of Clear Cell Renal Cell Carcinoma

被引:7
|
作者
Du, Bowen [1 ]
Zhou, Yulin [1 ]
Yi, Xiaoming [1 ]
Zhao, Tangliang [1 ]
Tang, Chaopeng [1 ]
Shen, Tianyi [1 ]
Zhou, Kai [1 ]
Wei, Huixian [1 ]
Xu, Song [1 ]
Dong, Jie [1 ]
Qu, Le [1 ]
He, Haowei [1 ]
Zhou, Wenquan [1 ]
机构
[1] Nanjing Univ, Jinling Hosp, Med Sch, Dept Urol, Nanjing, Peoples R China
来源
FRONTIERS IN ONCOLOGY | 2020年 / 10卷
基金
中国国家自然科学基金; 中国博士后科学基金;
关键词
ccRCC; tumor microenvironment; immunotherapy; TCGA; hub gene; CALCIUM (CA-O(2+))-SENSING RECEPTOR; HETEROGENEITY; COMPLEXITY; EXPRESSION; SIGNATURE;
D O I
10.3389/fonc.2020.01770
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
Clear cell renal cell carcinoma (ccRCC) is one of the most common tumors in the urinary system. Progression in immunotherapy has provided novel options for the ccRCC treatment. However, the understanding of the ccRCC microenvironment and the potential therapeutic targets in the microenvironment is still unclear. Here, we analyzed the gene expression profile of ccRCC tumors from the Cancer Genome Atlas (TCGA) and calculated the abundance ratios of immune cells for each sample. Then, seven types of immune cells were found to be correlated to overall survival, and 3863 immune-related genes were identified by analyzing differentially expressed genes. We also found that the function of immune-related genes was mainly focused on ligand-receptor binding and signaling pathway transductions. Additionally, we identified 13 hub genes by analyzing the protein-protein interaction network, and seven of them are related to overall survival. Our study not only expands the understanding of fundamental biological features of microenvironment but also provides potential therapeutic targets.
引用
收藏
页数:12
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