GenomeDiagram: a python']python package for the visualization of large-scale genomic data

被引：68

作者：

Pritchard, L ^{[1
]}

White, JA ^{[1
]}

Birch, PRJ ^{[1
]}

Toth, IK ^{[1
]}

机构：

[1] Scottish Crop Res Inst, Plant Pathogen Programme, Dundee DD2 5DA, Scotland

来源：

BIOINFORMATICS | 2006年 / 22卷 / 05期

关键词：

D O I：

10.1093/bioinformatics/btk021

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We present GenomeDiagram, a flexible, open-source Python module for the visualization of large-scale genomic, comparative genomic and other data with reference to a single chromosome or other biological sequence. GenomeDiagram may be used to generate publication-quality vector graphics, rastered images and in-line streamed graphics for webpages. The package integrates with datatypes from the BioPython project, and is available for Windows, Linux and Mac OS X systems. Availability: GenomeDiagram is freely available as source code (under GNU Public License) at http://bioinf.scri.ac.uk/lp/programs.html, and requires Python 2.3 or higher, and recent versions of the ReportLab and BioPython packages. Contact: lpritc@scri.ac.uk Supplementary Information A user manual, example code and images are available at http://bioinf.scri.ac.uk/lp/programs.html.

引用

页码：616 / 617

页数：2

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