Developing an Open Source, Reusable Platform for Distributed Collaborative Information Management in the Early Detection Research Network

被引:0
|
作者
Hart, Andrew F. [1 ]
Verma, Rishi [1 ]
Mattmann, Chris A. [1 ]
Crichton, Daniel J. [1 ]
Kelly, Sean [1 ]
Kincaid, Heather [1 ]
Hughes, Steven [1 ]
Ramirez, Paul [1 ]
Goodale, Cameron [1 ]
Anton, Kristen [2 ]
Colbert, Maureen [2 ]
Downs, Robert R. [3 ]
Patriotis, Christos [4 ]
Srivastava, Sudhir [4 ]
机构
[1] CALTECH, Jet Prop Lab, 4800 Oak Grove Dr, Pasadena, CA 91109 USA
[2] Dartmouth Med Sch, Lebanon, NH 03766 USA
[3] Columbia Univ, Ctr Int Earth Sci Informat Network, Palisades, NY 10964 USA
[4] Natl Canc Inst, Natl Inst Hlth, Bethesda, MD 20892 USA
基金
美国国家航空航天局;
关键词
OPEN SOURCE SOFTWARE;
D O I
暂无
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
For the past decade, the NASA Jet Propulsion Laboratory, in collaboration with Dartmouth University has served as the center for informatics for the Early Detection Research Network (EDRN). The EDRN is a multi-institution research effort funded by the U. S. National Cancer Institute (NCI) and tasked with identifying and validating biomarkers for the early detection of cancer. As the distributed network has grown, increasingly formal processes have been developed for the acquisition, curation, storage, and dissemination of heterogeneous research information assets, and an informatics infrastructure has emerged. In this paper we discuss the evolution of EDRN informatics, its success as a mechanism for distributed information integration, and the potential sustainability and reuse benefits of emerging efforts to make the platform components themselves open source. We describe our experience transitioning a large closed-source software system to a community-driven, open source project at the Apache Software Foundation, and point to lessons learned that will guide our present efforts to promote the reuse of the EDRN informatics infrastructure by a broader community.
引用
收藏
页码:263 / 270
页数:8
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共 37 条
  • [1] An open framework for collaborative distributed information management
    DeRoure, D
    Hall, W
    Reich, S
    Pikrakis, A
    Hill, G
    Stairmand, M
    [J]. COMPUTER NETWORKS AND ISDN SYSTEMS, 1998, 30 (1-7): : 624 - 625
  • [2] NextPyter: Open-Source Research Collaborative Platform
    Faenza, Francesco
    Fregni, Lisa
    Maccaferri, Emiliano
    Canali, Claudia
    [J]. PRACTICE AND EXPERIENCE IN ADVANCED RESEARCH COMPUTING 2024, PEARC 2024, 2024,
  • [3] Distributed information services supporting collaborative network management
    Mulder, W.
    Meijer, G. R.
    [J]. NETWORK-CENTRIC COLLABORATION AND SUPPORTING FRAMEWORKS, 2006, 224 : 491 - +
  • [4] Open source tool for management network information
    Formoso, Vreixo
    Cacheda, Fidel
    Carneiro, Victor
    Valino, Juan
    [J]. 2007 LATIN AMERICAN NETWORK OPERATIONS AND MANAGEMENT SYMPOSIUM, 2007, : 50 - 56
  • [5] TIDEPOOL: AN OPEN SOURCE, EXTENSIBLE PLATFORM FOR DIABETES MANAGEMENT AND RESEARCH
    Look, H.
    [J]. DIABETES TECHNOLOGY & THERAPEUTICS, 2016, 18 : A7 - A7
  • [6] The research on permission management of the open-source Sakai platform
    Li, Hao
    Liu, Qingtang
    Wang, Qiao
    [J]. 2009 INTERNATIONAL CONFERENCE ON INDUSTRIAL AND INFORMATION SYSTEMS, PROCEEDINGS, 2009, : 66 - 69
  • [7] Research on collaborative management and design platform of processing equipment for network manufacturing
    Guo, Hong
    Yan, Xianguo
    Li, Jianwei
    [J]. 7TH INTERNATIONAL CONFERENCE ON COMPUTER-AIDED INDUSTRIAL DESIGN & CONCEPTUAL DESIGN, 2006, : 90 - 93
  • [8] The Research on Network Platform for Information Processing Based on Public Management
    Xu Lili
    [J]. PROCEEDINGS OF THE 2015 INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS RESEARCH AND MECHATRONICS ENGINEERING, 2015, 121 : 1884 - 1887
  • [9] COLLABORATIVE HEALTH OUTCOMES INFORMATION REGISTRY (CHOIR): OPEN SOURCE PLATFORM FOR LEARNING HEALTH SYSTEMS
    Kao, M.
    Cook, K.
    Olson, G.
    Darnall, B. D.
    Weber, S.
    Mackey, S.
    Flood, P.
    [J]. ANESTHESIA AND ANALGESIA, 2016, 122
  • [10] Introduction - The Early Detection Research Network: A platform for communication and collaboration
    Kutkat, L
    Srivastava, S
    [J]. DISEASE MARKERS, 2001, 17 (01) : 3 - 4