Paleovirology: inferring viral evolution from host genome sequence data

被引:38
|
作者
Katzourakis, Aris [1 ]
机构
[1] Univ Oxford, Dept Zool, Oxford OX1 3PS, England
关键词
virus evolution; genomics; endogenous viral element; endogenous retrovirus; ENDOGENOUS LENTIVIRUS; RETROVIRUSES; VIRUSES; IDENTIFICATION; IMMUNITY; ELEMENTS;
D O I
10.1098/rstb.2012.0493
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
[No abstract available]
引用
收藏
页数:4
相关论文
共 50 条
  • [1] A novel framework for inferring parameters of transmission from viral sequence data
    Lumby, Casper K.
    Nene, Nuno R.
    Illingworth, Christopher J. R.
    PLOS GENETICS, 2018, 14 (10):
  • [2] Identifying Selection in the Within-Host Evolution of Influenza Using Viral Sequence Data
    Illingworth, Christopher J. R.
    Fischer, Andrej
    Mustonen, Ville
    PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (07)
  • [3] TIGER: inferring DNA replication timing from whole-genome sequence data
    Koren, Amnon
    Massey, Dashiell J.
    Bracci, Alexa N.
    Robinson, Peter
    BIOINFORMATICS, 2021, 37 (22) : 4001 - 4005
  • [4] Inferring Bacterial Infiltration in Primary Colorectal Tumors From Host Whole Genome Sequencing Data
    Guo, Man
    Xu, Er
    Ai, Dongmei
    FRONTIERS IN GENETICS, 2019, 10
  • [5] Inferring Phylogenies from RAD Sequence Data
    Rubin, Benjamin E. R.
    Ree, Richard H.
    Moreau, Corrie S.
    PLOS ONE, 2012, 7 (04):
  • [6] Inferring Transmission Bottleneck Size from Viral Sequence Data Using a Novel Haplotype Reconstruction Method
    Ghafari, Mahan
    Lumby, Casper K.
    Weissman, Daniel B.
    Illingworth, Christopher J. R.
    JOURNAL OF VIROLOGY, 2020, 94 (13)
  • [7] Inferring pandemic growth rates from sequence data
    de Silva, Eric
    Ferguson, Neil M.
    Fraser, Christophe
    JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2012, 9 (73) : 1797 - 1808
  • [8] Inferring coalescence times from DNA sequence data
    Tavare, S
    Balding, DJ
    Griffiths, RC
    Donnelly, P
    GENETICS, 1997, 145 (02) : 505 - 518
  • [9] Evolution of hepatitis B viral load and viral genome sequence during adefovir dipivoxil therapy
    Werle, B
    Cinquin, K
    Marcellin, P
    Pol, S
    Maynard, M
    Trépo, C
    Zoulim, F
    JOURNAL OF VIRAL HEPATITIS, 2004, 11 (01) : 74 - 83
  • [10] Inferring Demography from Runs of Homozygosity in Whole-Genome Sequence, with Correction for Sequence Errors
    MacLeod, Iona M.
    Larkin, Denis M.
    Lewin, Harris A.
    Hayes, Ben J.
    Goddard, Mike E.
    MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (09) : 2209 - 2223