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Characterization of the complete mitochondrial genome of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) and its phylogenetic implications
被引:9
|作者:
Sun, Yu
[1
]
Tian, Sen
[1
]
Qian, Cen
[1
]
Sun, Yu-Xuan
[1
]
Abbas, Muhammad N.
[1
]
Kausar, Saima
[1
]
Wang, Lei
[1
]
Wei, Guoqing
[1
]
Zhu, Bao-Jian
[1
]
Liu, Chao-Liang
[1
]
机构:
[1] Anhui Agr Univ, Coll Life Sci, 130 Changjiang West Rd, Hefei 230036, Peoples R China
基金:
中国国家自然科学基金;
关键词:
Lepidoptera;
Noctuoidea;
Erebidae;
Spilarctia robusta;
phylogenetic analyses;
mitogenome;
evolution;
gene rearrangement;
COMPLETE NUCLEOTIDE-SEQUENCE;
COMPLETE MITOGENOME;
MOLECULAR PHYLOGENY;
SILKWORM MOTH;
EVOLUTION;
CLASSIFICATION;
TRANSCRIPTION;
VARIABILITY;
GEOMETRIDAE;
PROGRAM;
D O I:
10.14411/eje.2016.076
中图分类号:
Q96 [昆虫学];
学科分类号:
摘要:
The complete mitochondrial genome (mitogenome) of Spilarctia robusta (Lepidoptera: Noctuoidea: Erebidae) was sequenced and analyzed. The circular mitogenome is made up of 15,447 base pairs (bp). It contains a set of 37 genes, with the gene complement and order similar to that of other lepidopterans. The 12 protein coding genes (PCGs) have a typical mitochondrial start codon (ATN codons), whereas cytochrome c oxidase subunit 1 (cox1) gene utilizes unusually the CAG codon as documented for other lepidopteran mitogenomes. Four of the 13 PCGs have incomplete termination codons, the cox1, nad4 and nad6 with a single T, but cox2 has TA. It comprises six major intergenic spacers, with the exception of the A+ T-rich region, spanning at least 10 bp in the mitogenome. The nucleotide composition of the genome is greatly A+T biased (81.09%), with a negative AT skewness (-0.007), indicating the presence of fewer As than Ts, similar to other Noctuoidea. The A+ T-rich region is 343 bp long, and contains some conserved regions, including an " ATAGA" motif followed by a 19 bp poly-T stretch, a microsatellite-like (AT)(9) and a poly-A element, a characteristic shared with other lepidopteran mitogenomes. Phylogenetic analysis, based on 13 PCGs using Maximum likelihood methods revealed that S. robusta belongs to the superfamily Noctuoidea.
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页码:558 / 570
页数:13
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