Draft genome sequence of the rubber tree Hevea brasiliensis

被引：180

作者：

Rahman, Ahmad Yamin Abdul ^{[1
]}

Usharraj, Abhilash O. ^{[1
]}

Misra, Biswapriya B. ^{[1
]}

Thottathil, Gincy P. ^{[1
]}

Jayasekaran, Kandakumar ^{[1
]}

Feng, Yun ^{[2
]}

Hou, Shaobin ^{[3
]}

Ong, Su Yean ^{[1
]}

Ng, Fui Ling ^{[1
]}

Lee, Ling Sze ^{[1
]}

Tan, Hock Siew ^{[1
]}

Sakaff, Muhd Khairul Luqman Muhd ^{[1
]}

Teh, Beng Soon ^{[1
]}

Khoo, Bee Feong ^{[1
]}

Badai, Siti Suriawati ^{[1
]}

Ab Aziz, Nurohaida ^{[1
]}

Yuryev, Anton ^{[4
]}

Knudsen, Bjarne ^{[5
]}

Dionne-Laporte, Alexandre ^{[3
]}

Mchunu, Nokuthula P. ^{[6
]}

Yu, Qingyi ^{[7
]}

Langston, Brennick J. ^{[7
]}

Freitas, Tracey Allen K. ^{[8
]}

Young, Aaron G. ^{[3
]}

Chen, Rui ^{[2
]}

Wang, Lei ^{[2
]}

Najimudin, Nazalan ^{[1
]}

Saito, Jennifer A. ^{[1
]}

Alam, Maqsudul ^{[1
,3
,8
]}

机构：

[1] Univ Sains Malaysia, Ctr Chem Biol, George Town, Malaysia

[2] Nankai Univ, TEDA Sch Biol Sci & Biotechnol, Tianjin 300071, Peoples R China

[3] Univ Hawaii, Honolulu, HI 96822 USA

[4] Ariadne Genom Inc, Rockville, MD USA

[5] CLC Bio, Aarhus, Denmark

[6] Durban Univ Technol, Dept Biotechnol & Food Technol, Durban, South Africa

[7] Texas A&M Univ Syst, Dept Plant Pathol & Microbiol, AgriLife Res Ctr, Weslaco, TX USA

[8] Univ Hawaii, Dept Microbiol, Honolulu, HI 96822 USA

来源：

BMC GENOMICS | 2013年 / 14卷

关键词：

Hevea brasiliensis; Euphorbiaceae; Natural rubber; Genome; BOX GENE FAMILY; MAXIMUM-LIKELIHOOD; BLACK COTTONWOOD; WIDE ANALYSIS; TRANSCRIPTOME; EXPRESSION; DATABASE; RNA; ALIGNMENT; IDENTIFICATION;

D O I：

10.1186/1471-2164-14-75

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Background: Hevea brasiliensis, a member of the Euphorbiaceae family, is the major commercial source of natural rubber (NR). NR is a latex polymer with high elasticity, flexibility, and resilience that has played a critical role in the world economy since 1876. Results: Here, we report the draft genome sequence of H. brasiliensis. The assembly spans similar to 1.1 Gb of the estimated 2.15 Gb haploid genome. Overall, similar to 78% of the genome was identified as repetitive DNA. Gene prediction shows 68,955 gene models, of which 12.7% are unique to Hevea. Most of the key genes associated with rubber biosynthesis, rubberwood formation, disease resistance, and allergenicity have been identified. Conclusions: The knowledge gained from this genome sequence will aid in the future development of high-yielding clones to keep up with the ever increasing need for natural rubber.

引用

页数：15

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