The effect of water on infrared spectra of DNA

被引:11
|
作者
Taniguchi, Hisashi [1 ]
Saito, Mineo [1 ]
机构
[1] Kanazawa Univ, Grad Sch Nat Sci & Technol, Div Math & Phys Sci, Kanazawa, Ishikawa 9201192, Japan
关键词
D O I
10.1088/0953-8984/21/6/064242
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
The effect of water on infrared (IR) spectra of DNA is studied by using first-principles calculations based on the hybrid density functional theory. Our calculations of frequencies of C=O stretching modes in DNA without water do not reproduce the IR spectra, whereas calculations for DNA surrounded by water reproduce the IR spectra well. We also find that the energy of adsorption of one water molecule around a C=O site is large (similar or equal to 0.6 eV) owing to hydrogen bond formation. We therefore conclude that the effect of water plays an important role as regards IR spectra of DNA in a water solution.
引用
收藏
页数:4
相关论文
共 50 条
  • [1] INFRARED-SPECTRA AND DNA
    不详
    [J]. NATURE, 1972, 236 (5344) : 197 - &
  • [2] Effect of structural characteristics of water on the infrared absorption and Raman spectra
    Zhukovskii, AP
    Shurupova, LV
    Zhukovskii, MA
    [J]. JOURNAL OF STRUCTURAL CHEMISTRY, 1995, 36 (03) : 426 - 431
  • [3] EFFECT OF WATER OF HYDRATION ON INFRARED SPECTRA TERTIARY AMINE SALTS
    WARREN, RJ
    THOMPSON, WE
    ZAREMBO, JE
    [J]. JOURNAL OF PHARMACEUTICAL SCIENCES, 1965, 54 (10) : 1554 - &
  • [4] EFFECT OF MAGNETIC-FIELDS ON ROTATIONAL INFRARED-SPECTRA OF WATER
    USATENKO, ST
    MOROZOV, VI
    KLASSEN, VI
    [J]. COLLOID JOURNAL OF THE USSR, 1977, 39 (05): : 903 - 906
  • [5] Effect of Water Ligation on the Redox Potential and Infrared Spectra of Chlorophyll-a
    Hu Qiong
    Wang Guo-Ying
    Ou Jia-Ming
    Wang Rui-Li
    [J]. ACTA PHYSICO-CHIMICA SINICA, 2010, 26 (11) : 3035 - 3040
  • [6] EFFECT OF LO 60-GAMMA-RAYS ON INFRARED-SPECTRA OF DNA
    KAROLYI, G
    SKAPINYECZ, J
    SOMOGYI, B
    DAMJANOVICH, S
    [J]. ACTA BIOCHIMICA ET BIOPHYSICA HUNGARICA, 1972, 7 (02) : 179 - 185
  • [7] THE INFRARED PREDISSOCIATION SPECTRA OF WATER CLUSTERS
    COKER, DF
    MILLER, RE
    WATTS, RO
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1985, 82 (08): : 3554 - 3562
  • [8] Infrared intensities and spectra of water clusters
    Kuyanov, Kirill E.
    Slipchenko, Mikhail N.
    Vilesov, Andrey F.
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2006, 231
  • [9] INFRARED SPECTRA OF AMINO ACIDS IN WATER
    PARKER, FS
    KIRSCHENBAUM, DM
    [J]. SPECTROCHIMICA ACTA, 1960, 16 (08): : 910 - 917
  • [10] INFRARED SPECTRA OF AMMONIA-WATER ICES
    Zheng, Weijun
    Jewitt, David
    Kaiser, Ralf I.
    [J]. ASTROPHYSICAL JOURNAL SUPPLEMENT SERIES, 2009, 181 (01): : 53 - 61