Does Intrinsic Disorder in Proteins Favor Their Interaction with Lipids?

被引:21
|
作者
Deryusheva, Evgenia [1 ]
Nemashkalova, Ekaterina [1 ]
Galloux, Marie [2 ]
Richard, Charles-Adrien [2 ]
Eleouet, Jean-Francois [2 ]
Kovacs, Denis [3 ]
Van Belle, Karo [3 ]
Tompa, Peter [3 ,4 ]
Uversky, Vladimir [1 ,5 ,6 ]
Permyakov, Sergei [1 ]
机构
[1] Russian Acad Sci, Inst Biol Instrumentat, Pushchino 142290, Moscow Region, Russia
[2] Univ Paris Saclay, INRA, VIM, F-78350 Jouy En Josas, France
[3] Vrije Univ Brussel, VIB, Struct Biol Res Ctr, B-1050 Brussels, Belgium
[4] Hungarian Acad Sci, Res Ctr Nat Sci, Inst Enzymol, H-1117 Budapest, Hungary
[5] Univ S Florida, Morsani Coll Med, Dept Mol Med, Tampa, FL 33612 USA
[6] Univ S Florida, Morsani Coll Med, USF Hlth Byrd Alzheimers Res Inst, Tampa, FL 33612 USA
基金
俄罗斯基础研究基金会;
关键词
DisProt database; intrinsically disordered proteins; lipid-binding proteins; MOLECULAR-WEIGHT PROTEINS; BOVINE SERUM-ALBUMIN; LUCIUS WHITE MUSCLES; ALPHA-LACTALBUMIN; ALZHEIMERS-DISEASE; BETA-CASEIN; P-PROTEIN; IN-VITRO; ACID; TAU;
D O I
10.1002/pmic.201800098
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Intrinsically disordered proteins (IDPs) are implicated in a range of human diseases, some of which are associated with the ability to bind to lipids. Although the presence of solvent-exposed hydrophobic regions in IDPs should favor their interactions with low-molecular-weight hydrophobic/amphiphilic compounds, this hypothesis has not been systematically explored as of yet. In this study, the analysis of the DisProt database with regard to the presence of lipid-binding IDPs (LBIDPs) reveals that they comprise, at least, 15% of DisProt entries. LBIDPs are classified into four groups by ligand type, functional categories, domain structure, and conformational state. 57% of LBIDPs are classified as ordered according to the CH-CDF analysis, and 70% of LBIDPs possess lengths of disordered regions below 50%. To investigate the lipid-binding properties of IDPs for which lipid binding is not reported, three proteins from different conformational groups are rationally selected. They all are shown to bind linoleic (LA) and oleic (OA) acids with capacities ranging from 9 to 34 LA/OA molecules per protein molecule. The association with LA/OA causes the formation of high-molecular-weight lipid-protein complexes. These findings suggest that lipid binding is common among IDPs, which can favor their involvement in lipid metabolism.
引用
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页数:9
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