Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Carya ovata

被引:2
|
作者
Xu, Mengyang [1 ,3 ]
Lyu, Yunzhou [2 ]
Guo, Zhongren [1 ,3 ]
Mo, Zhenghai [1 ,3 ]
机构
[1] Jiangsu Prov & Chinese Acad Sci, Inst Bot, Nanjing, Peoples R China
[2] Jiangsu Acad Forestry, Nanjing, Peoples R China
[3] Jiangsu Prov Platform Conservat & Utilizat Agr Ge, Nanjing, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Carya ovata; chloroplast genome; phylogenetic analysis; EVOLUTION;
D O I
10.1080/23802359.2020.1797584
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Carya ovatais a slow-growing, long-lived deciduous species that belongs to sectionCaryaof genusCarya. In this study, wede novoassembled the complete chloroplast genome ofC.ovata, and analyzed its phylogenetic relationship. The circular genome was 160,765 bp in length, comprising a large single-copy region (89,975 bp), a small single-copy region (18,788 bp), and a pair of inverted repeat regions (26,001 bp each). The chloroplast genome was predicted to contain 131 genes, including 83 protein-coding genes, 40 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Overall, the GC content of the chloroplast genome was 36.16%. Phylogenetic analysis suggested thatC.ovatawas closely related toC. illinoinensis, a representative of sectionApocaryawithin the genusCarya.
引用
收藏
页码:3087 / 3088
页数:2
相关论文
共 50 条
  • [1] The Complete Chloroplast Genome of Carya cathayensis and Phylogenetic Analysis
    Shen, Jianshuang
    Li, Xueqin
    Chen, Xia
    Huang, Xiaoling
    Jin, Songheng
    [J]. GENES, 2022, 13 (02)
  • [2] Characterization and phylogenetic relationships analysis of the complete chloroplast genome of Capsicum annuum (Solanaceae)
    Bie, Mei
    Han, Chengdong
    Wang, Xuanyao
    Xiao, Wei
    Song, Kai
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 570 - 571
  • [3] Phylogenetic relationships and characterization of the complete chloroplast genome of Rosa sterilis
    Yan, Huiqing
    Liu, Yanjing
    Wu, Zongmin
    Yi, Yin
    Huang, Xiaolong
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (04): : 1544 - 1546
  • [4] Characterization of the complete chloroplast genome of Houttuynia cordata Thunb and phylogenetic relationships
    Yang, Xue-Lian
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 605 - 606
  • [5] Characterization of the complete chloroplast genome of Eriobotrya japonica in China and phylogenetic relationships
    Huang, Jing
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1367 - 1369
  • [6] The complete chloroplast genome sequence of Carya illinoinensis cv. wichita and its phylogenetic analysis
    Feng, Gang
    Mo, Zheng-Hai
    Peng, Fang-Ren
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 2235 - 2236
  • [7] The complete chloroplast genome characterization and phylogenetic analysis of Canarium album
    Lai, Rui-lian
    Feng, Xin
    Chen, Jin
    Chen, Yi-ting
    Wu, Ru-jian
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2948 - 2949
  • [8] Characterization of the complete chloroplast genome of Gerbera jamesonii Bolus in China and phylogenetic relationships
    Zhang, Yong-Yan
    Liu, Fan
    Wang, Xing-qi
    Shi, Xiao-bao
    Tian, Na
    Lai, Zhong-Xiong
    Cheng, Chun-Zhen
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2706 - 2707
  • [9] The Chloroplast Genome of Carya illinoinensis: Genome Structure, Adaptive Evolution, and Phylogenetic Analysis
    Mo, Zhenghai
    Lou, Wenrui
    Chen, Yaqi
    Jia, Xiaodong
    Zhai, Min
    Guo, Zhongren
    Xuan, Jiping
    [J]. FORESTS, 2020, 11 (02):
  • [10] The complete chloroplast genome of Ixora chinensis and phylogenetic relationships
    Bian, Ana
    Lu, Luanmei
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (11): : 3217 - 3221