Interactive motif and fold recognition in protein structures

被引：35
|
作者：
Madsen, D [1 ]
Kleywegt, GJ [1 ]
机构：
[1] Uppsala Univ, Dept Cell & Mol Biol, Biomed Ctr, SE-75124 Uppsala, Sweden
来源：
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 2002年 / 35卷
关键词：
D O I：
10.1107/S0021889802000602
中图分类号：
O6 [化学];
学科分类号：
0703 ;
摘要：
Two previously developed software tools for pattern recognition in protein structures at the level of the fold (DEJAVU) and at the level of assemblies of individual residues (SPASM) have been improved in order to increase their specificity significantly. In addition, web-servers have been developed for both tools thereby greatly enhancing the ease with which even non-experts can employ them.
引用
收藏
页码：137 / 139
页数：3
相关论文
共 50 条
  • [1] A simple motif for protein recognition in DNA secondary structures
    Landt, SG
    Ramirez, A
    Daugherty, MD
    Frankel, AD
    JOURNAL OF MOLECULAR BIOLOGY, 2005, 351 (05) : 982 - 994
  • [2] Protein fold recognition by mapping predicted secondary structures
    Russell, RB
    Copley, RR
    Barton, GJ
    JOURNAL OF MOLECULAR BIOLOGY, 1996, 259 (03) : 349 - 365
  • [3] PROTEIN FOLD RECOGNITION
    SHORTLE, D
    NATURE STRUCTURAL BIOLOGY, 1995, 2 (02): : 91 - 93
  • [4] PROTEIN FOLD RECOGNITION
    JONES, D
    THORNTON, J
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 1993, 7 (04) : 439 - 456
  • [5] MotifCNN-fold: protein fold recognition based on fold-specific features extracted by motif-based convolutional neural networks
    Li, Chen-Chen
    Liu, Bin
    BRIEFINGS IN BIOINFORMATICS, 2020, 21 (06) : 2133 - 2141
  • [6] Orientational potentials extracted from protein structures improve native fold recognition
    Buchete, NV
    Straub, JE
    Thirumalai, D
    PROTEIN SCIENCE, 2004, 13 (04) : 862 - 874
  • [7] SelfAT-Fold: Protein Fold Recognition Based on Residue-Based and Motif-Based Self-Attention Networks
    Pang, Yihe
    Liu, Bin
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2022, 19 (03) : 1861 - 1869
  • [8] IdMotif: An Interactive Motif Identification in Protein Sequences
    Park, Ji Hwan
    Prasad, Vikash
    Newsom, Sydney
    Najar, Fares
    Rajan, Rakhi
    IEEE COMPUTER GRAPHICS AND APPLICATIONS, 2024, 44 (03) : 114 - 125
  • [9] Perspectives in protein-fold recognition
    Torda, AE
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 1997, 7 (02) : 200 - 205
  • [10] A comparison study on protein fold recognition
    Bologna, G
    Appel, RD
    ICONIP'02: PROCEEDINGS OF THE 9TH INTERNATIONAL CONFERENCE ON NEURAL INFORMATION PROCESSING: COMPUTATIONAL INTELLIGENCE FOR THE E-AGE, 2002, : 2492 - 2496
12345