A rapid method for illustrating features in both coding and non-coding regions of a genome

被引：3

作者：

Hall, R ^{[1
]}

Stern, L ^{[1
]}

机构：

[1] Univ Melbourne, Dept Comp Sci & Software Engn, Melbourne, Vic 3010, Australia

来源：

BIOINFORMATICS | 2004年 / 20卷 / 06期

关键词：

D O I：

10.1093/bioinformatics/bth042

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

A bitmap display of the Fourier spectra has been developed which allows convenient whole chromosome scanning for genes and other features. Use of a limited sliding window gives rapid visualization and localization of coding regions in the chromosomes, as well as non-coding features such as repetitive DNA. The method works particularly well on organisms with a skewed base composition, to provide an overview of genomic features.

引用

页码：982 / 983

页数：2

共 50 条

[1] Annotating non-coding regions of the genome
Alexander, Roger P.
Fang, Gang
Rozowsky, Joel
Snyder, Michael
Gerstein, Mark B.
NATURE REVIEWS GENETICS, 2010, 11 (08) : 559 - 571
[2] Annotating non-coding regions of the genome
Roger P. Alexander
Gang Fang
Joel Rozowsky
Michael Snyder
Mark B. Gerstein
Nature Reviews Genetics, 2010, 11 : 559 - 571
[3] Biophysical Features of Non-Coding Genome Sequences
Subirana, Juan A.
Anokian, Ezequiel
Moreno, Tadeo
Pous, Joan
Messeguer, Xavier
Lourdes Campos, J.
BIOPHYSICAL JOURNAL, 2010, 98 (03) : 659A - 659A
[4] Rapid sequencing of the non-coding regions of influenza A virus
de Wit, Emmie
Bestebroer, Theo M.
Spronken, Monique I. J.
Rimmelzwaan, Guus F.
Osterhaus, Albert D. M. E.
Fouchier, Ron A. M.
JOURNAL OF VIROLOGICAL METHODS, 2007, 139 (01) : 85 - 89
[5] Reduced genetic variability within coding and non-coding regions of the Echinococcus multilocularis genome
Haag, KL
Zaha, A
Araujo, AM
Gottstein, B
PARASITOLOGY, 1997, 115 : 521 - 529
[6] Recovery of fitness of a live attenuated simian immunodeficiency virus through compensation in both the coding and non-coding regions of the viral genome
Whitney, James B.
Wainberg, Mark A.
RETROVIROLOGY, 2007, 4 (1)
[7] ANOMALOUS DINUCLEOTIDE FREQUENCIES IN BOTH CODING AND NON-CODING REGIONS FROM THE GENOME OF THE HUMAN MALARIA PARASITE PLASMODIUM-FALCIPARUM
HYDE, JE
SIMS, PFG
GENE, 1987, 61 (02) : 177 - 187
[8] Recovery of fitness of a live attenuated simian immunodeficiency virus through compensation in both the coding and non-coding regions of the viral genome
James B Whitney
Mark A Wainberg
Retrovirology, 4
[9] PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions
Lin, Michael F.
Jungreis, Irwin
Kellis, Manolis
BIOINFORMATICS, 2011, 27 (13) : I275 - I282
[10] Towards better interpretation of variants in non-coding regions of the genome
Whiffin, Nicola
EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 20 - 20

← 1 2 3 4 5 →