EPoS: a modular software framework for phylogenetic analysis

被引:36
|
作者
Griebel, Thasso [1 ]
Brinkmeyer, Malte [1 ]
Boecker, Sebastian [1 ]
机构
[1] Univ Jena, Fac Math & Comp Sci, D-07743 Jena, Germany
关键词
D O I
10.1093/bioinformatics/btn364
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Estimating Phylogenies of Species (EPoS) is a modular software framework for phylogenetic analysis, visualization and data management. It provides a plugin-based system that integrates a storage facility, a rich user interface and the ability to easily incorporate new methods, functions and visualizations. EPoS ships with persistent data management, a set of well-known phylogenetic algorithms and a multitude of tree visualization methods and layouts. Implemented algorithms cover distance-based tree construction, consensus trees and various graph-based supertree methods. The rendering system can be customized for, say, different edge and node styles.
引用
收藏
页码:2399 / 2400
页数:2
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