Conformational behaviour of an analogue of the S-peptide: A molecular dynamics study

被引:0
|
作者
Abruscato, V
Ranghino, G
Villa, AM
机构
[1] IST GUIDO DONEGANI SPA,ENICHEM,I-28100 NOVARA,ITALY
[2] UNIV MILAN,IST CHIM FARMACEUT & TOSSICOL,I-20131 MILAN,ITALY
来源
PROTEIN AND PEPTIDE LETTERS | 1996年 / 3卷 / 04期
关键词
D O I
暂无
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The S-peptide, derived from the hydrolysis of Ribonuclease, is a stable alpha-helix in water, although it is only 20 amino acids long. In view of increasing the helical content and stability, a mutated sequence has been proposed. The present work aims to shed light on the conformational preferences and on the helix stability of the proposed sequence by means of Molecular Dynamics simulations performed with different procedures.
引用
收藏
页码:275 / 282
页数:8
相关论文
共 50 条
  • [1] Molecular dynamics simulations of urea and thermal-induced denaturation of S-peptide analogue
    Zhang, ZY
    Zhu, YJ
    Shi, YY
    [J]. BIOPHYSICAL CHEMISTRY, 2001, 89 (2-3) : 145 - 162
  • [2] Interactions of S-peptide analogue in aqueous urea and trimethylamine-N-oxide solutions: A molecular dynamics simulation study
    Sarma, Rahul
    Paul, Sandip
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2013, 139 (03):
  • [3] RIBONUCLEASE S-PEPTIDE - MODEL FOR MOLECULAR RECOGNITION
    LEVIT, S
    BERGER, A
    [J]. JOURNAL OF BIOLOGICAL CHEMISTRY, 1976, 251 (05) : 1333 - 1339
  • [4] CONFORMATIONAL BEHAVIOUR OF SIALOKININ I TACHYKININ PEPTIDE BY MOLECULAR MECHANICS AND MOLECULAR DYNAMICS SIMULATION
    Agaeva, G. A.
    [J]. PROCEEDINGS OF THE 6TH INTERNATIONAL CONFERENCE ON CONTROL AND OPTIMIZATION WITH INDUSTRIAL APPLICATIONS, VOL II, 2018, : 29 - 31
  • [5] INTERACTION OF S-PROTEIN WITH S-PEPTIDE AND WITH SYNTHETIC S-PEPTIDE ANALOGS - SPECTROSCOPIC AND CALORIMETRIC INVESTIGATION
    ROCCHI, R
    SCOFFONE, E
    CRESCENZI, V
    MORODER, L
    BORIN, G
    QUADRIFOGLIO, F
    PEGGION, E
    MARCHIORI, F
    [J]. BIOCHEMISTRY, 1972, 11 (01) : 50 - +
  • [6] Photoinduced conformational dynamics of a photoswitchable peptide: A nonequilibrium molecular dynamics simulation study
    Nguyen, Phuong H.
    Gorbunov, Roman D.
    Stock, Gerhard
    [J]. BIOPHYSICAL JOURNAL, 2006, 91 (04) : 1224 - 1234
  • [7] Conformational dynamics of RNA-peptide binding: A molecular dynamics simulation study
    Mu, YG
    Stock, G
    [J]. BIOPHYSICAL JOURNAL, 2006, 90 (02) : 391 - 399
  • [8] DYNAMICS IN RUGGED ENERGY LANDSCAPES WITH APPLICATIONS TO THE S-PEPTIDE AND RIBONUCLEASE-A
    STRAUB, JE
    RASHKIN, AB
    THIRUMALAI, D
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (05) : 2049 - 2063
  • [9] Molecular Dynamics Study of the Solution Behaviour of Antimicrobial Peptide Indolicidin
    Marinova, Rositsa
    Petkov, Peicho
    Ilieva, Nevena
    Lilkova, Elena
    Litov, Leandar
    [J]. ADVANCED COMPUTING IN INDUSTRIAL MATHEMATICS (BGSIAM 2017), 2019, 793 : 257 - 265
  • [10] Molecular dynamics and conformational behaviour of mesogenic resorcinarenes
    Dalcanale, E
    Antonioli, G
    Riccò, M
    Groothues, H
    Kremer, F
    [J]. LIQUID CRYSTALS, 2000, 27 (09) : 1161 - 1169