Characterization of the complete chloroplast genome ofRumex nepalensis(Polygonaceae)

被引：2
|
作者：
Wu, Chun-Xia [1 ]
Zhai, Cai-Cai [1 ]
Fan, Shou-Jin [1 ]
机构：
[1] Shandong Normal Univ, Coll Life Sci, Key Lab Plant Stress Res, Jinan, Shandong, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词：
Plastome; phylogeny; Rumex nepalensis;
D O I：
10.1080/23802359.2020.1778568
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Rumex nepalensis(Polygonaceae) is a fairly common perennial herb of high altitudes. In this study, we determined the complete chloroplast genome (plastome) ofR. nepalensiswith genome-skimming method. The complete plastome ofR. nepalensiswas 159,110 bp in length with a quadripartite structure, including a large single-copy region of 84,810 bp, a small single-copy region of 13,044 bp, and a pair of inverted repeats regions of 30,628 bp. The overall guanine-cytosine (GC) content was 37.5%. A total of 112 unique genes was annotated in this plastome, including 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. In the ML tree,R. nepalensiswas sister toR. crispus, andRumexwas sister to a clade comprisingRheumandOxyriawithin Polygonaceae famliy.
引用
收藏
页码：2458 / 2459
页数：2
相关论文
共 50 条
  • [1] The complete chloroplast genome sequence ofRumex nepalensisSpreng
    Liu, Jiang
    Wei, Yongsheng
    Lan, Xiaozhong
    Zhao, Kaihui
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3243 - 3244
  • [2] Characterization of the complete chloroplast genome of medicinal plant Rheum officinale (Polygonaceae)
    Li, Yimin
    Li, Huan
    Hei, Xiaobin
    Li, Yuanmin
    Li, Hui
    Gao, Jing
    Yan, Yonggang
    Liu, Mengmeng
    Zhang, Gang
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 2144 - 2145
  • [3] Characterization of the complete chloroplast genome of Rumex dentatus L. (Polygonaceae)
    Zhang, Suping
    Guo, Bingao
    He, Sheqi
    He, Yanxia
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (03): : 546 - 547
  • [4] The complete chloroplast genome of Emex australis (Polygonaceae)
    Choi, Kyoung Su
    Lee, Won-Hyoung
    Park, SeonJoo
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1431 - 1432
  • [5] Characterization of the complete chloroplast genome of Homalocladium platycladum (Polygonaceae) and its phylogenetic analysis
    Chen, Zijie
    Fu, Qingxiang
    Tai, Changrui
    Zhai, Wei
    Zhao, Kai
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (09): : 1691 - 1693
  • [6] The complete chloroplast genome of Piptanthus nepalensis, a medicinal plant
    Sun, Huigai
    Zheng, Kaiyan
    Han, Xiaowei
    Song, Junna
    Li, Yang
    Du, Lei
    Zheng, Yuguang
    Ma, Donglai
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (05): : 796 - 797
  • [7] Characterization of the complete chloroplast genome of traditional Tibetan herb, Rheum Pumilum Maxim. (Polygonaceae)
    Li, Rui
    Zhang, Xiaofeng
    Wang, Jiuli
    Zhou, Dangwei
    Wang, Huan
    Shi, Shengbo
    Cheng, Tingfeng
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 133 - 135
  • [8] The complete chloroplast genome sequence of the medicinal plant Fagopyrum dibotrys (Polygonaceae)
    Zhang, Yan
    Chen, Chen
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 1087 - 1089
  • [9] The complete chloroplast genome of medicinal herb Reynoutria japonica Houtt. (Polygonaceae)
    Candassamy, Sanjana Vijaya
    Wu, Jun-Jie
    Zhou, Xuan
    Wang, Rui-Hong
    Qi, Zhe-Chen
    Yan, Xiao-Ling
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1983 - 1985
  • [10] Phylogenetic relationship and characterization of the complete chloroplast genome of the Coriaria nepalensis Wall. in China, a least concern folk medicine
    Fang, Hailan
    Shang, Feineng
    Qian, Jun
    Duan, Baozhong
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (02): : 1718 - 1719
12345