CRITERIA FOR AN UPDATED CLASSIFICATION OF HUMAN TRANSCRIPTION FACTOR DNA-BINDING DOMAINS

被引：7

作者：

Wingender, Edgar ^{[1
,2
]}

机构：

[1] Univ Med Ctr Groningen, Dept Bioinformat, D-37077 Gottingen, Germany

[2] geneXplain GmbH, D-38302 Wolfenbuttel, Germany

来源：

JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY | 2013年 / 11卷 / 01期

关键词：

Transcription factors; DNA-binding domains; classification; CRYSTAL-STRUCTURE; STRUCTURAL BASIS; COMPLEX REVEALS; GLUCOCORTICOID-RECEPTOR; PROTEIN; BOX; SEQUENCE; RECOGNITION; NOMENCLATURE; ELEMENT;

D O I：

10.1142/S0219720013400076

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

By binding to cis-regulatory elements in a sequence-specific manner, transcription factors regulate the activity of nearby genes. Here, we discuss the criteria for a comprehensive classification of human TFs based on their DNA-binding domains. In particular, classification of basic leucine zipper (bZIP) and zinc finger factors is exemplarily discussed. The resulting classification can be used as a template for TFs of other biological species.

引用

页数：21

共 50 条

[1] DNA-BINDING DOMAINS OF EUKARYOTIC TRANSCRIPTION FACTORS
ANGRAND, PO
[J]. M S-MEDECINE SCIENCES, 1993, 9 (6-7): : 725 - 736
[2] TRANSCRIPTION FACTOR STRUCTURE AND DNA-BINDING
WOLBERGER, C
[J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 1993, 3 (01) : 3 - 10
[3] Bacterial σ70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii
Kyrpides, NC
Ouzounis, CA
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1997, 45 (06) : 706 - 707
[4] DNA-BINDING DOMAINS OF HUMAN FIBRONECTIN
MCMASTER, GK
ZARDI, L
[J]. BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1982, 107 (02) : 609 - 617
[5] INTRINSIC DISORDER WITHIN AND FLANKING THE DNA-BINDING DOMAINS OF HUMAN TRANSCRIPTION FACTORS
Guo, Xin
Bulyk, Martha L.
Hartemink, Alexander J.
[J]. PACIFIC SYMPOSIUM ON BIOCOMPUTING 2012, 2012, : 104 - 115
[6] Bacterial a70 Transcription Factor DNA-Binding Domains in the Archaeon Methanococcus jannaschii
Kyrpides, N. C.
Ouzounis, C. A.
[J]. Journal of Molecular Evolution, 45 (06):
[7] Structures and evolutionary origins of plant-specific transcription factor DNA-binding domains
Yamasaki, Kazuhiko
Kigawa, Takanori
Inoue, Makoto
Watanabe, Satoru
Tateno, Masaru
Seki, Motoaki
Shinozaki, Kazuo
Yokoyama, Shigeyuki
[J]. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2008, 46 (03) : 394 - 401
[8] A DNA-BINDING DOMAIN OF HUMAN TRANSCRIPTION FACTOR-IIIC2
BOULANGER, PA
LETOILE, ND
BERK, AJ
[J]. NUCLEIC ACIDS RESEARCH, 1989, 17 (19) : 7761 - 7770
[9] Context features of transcription factor binding site sequences: Relation to DNA-binding domain classification
Orlov, Yu. L.
Proscura, A. L.
Vityaev, E. E.
Arrigo, P.
[J]. Proceedings of the Fourth International Conference on Bioinformatics of Genome Regulation and Structure, Vol 1, 2004, : 158 - 161
[10] Building an automated classification of DNA-binding protein domains
Ponomarenko, JV
Bourne, PE
Shindyalov, IN
[J]. BIOINFORMATICS, 2002, 18 : S192 - S201

← 1 2 3 4 5 →