A rare event approach to high-dimensional approximate Bayesian computation

被引:12
|
作者
Prangle, Dennis [1 ]
Everitt, Richard G. [2 ]
Kypraios, Theodore [3 ]
机构
[1] Newcastle Univ, Newcastle Upon Tyne, Tyne & Wear, England
[2] Univ Reading, Reading, Berks, England
[3] Univ Nottingham, Nottingham, England
关键词
ABC; Markov chain Monte Carlo; Sequential Monte Carlo; Slice sampling; Infectious disease modelling; CHAIN MONTE-CARLO; MODELS; SIMULATION; ALGORITHMS; INFERENCE; VARIABLES; EPIDEMIC; ABC;
D O I
10.1007/s11222-017-9764-4
中图分类号
TP301 [理论、方法];
学科分类号
081202 ;
摘要
Approximate Bayesian computation (ABC) methods permit approximate inference for intractable likelihoods when it is possible to simulate from the model. However, they perform poorly for high-dimensional data and in practice must usually be used in conjunction with dimension reduction methods, resulting in a loss of accuracy which is hard to quantify or control. We propose a new ABC method for high-dimensional data based on rare event methods which we refer to as RE-ABC. This uses a latent variable representation of the model. For a given parameter value, we estimate the probability of the rare event that the latent variables correspond to data roughly consistent with the observations. This is performed using sequential Monte Carlo and slice sampling to systematically search the space of latent variables. In contrast, standard ABC can be viewed as using a more naive Monte Carlo estimate. We use our rare event probability estimator as a likelihood estimate within the pseudo-marginal Metropolis-Hastings algorithm for parameter inference. We provide asymptotics showing that RE-ABC has a lower computational cost for high-dimensional data than standard ABC methods. We also illustrate our approach empirically, on a Gaussian distribution and an application in infectious disease modelling.
引用
收藏
页码:819 / 834
页数:16
相关论文
共 50 条
  • [1] A rare event approach to high-dimensional approximate Bayesian computation
    Dennis Prangle
    Richard G. Everitt
    Theodore Kypraios
    Statistics and Computing, 2018, 28 : 819 - 834
  • [2] Approximate Bayesian Computation and Bayes' Linear Analysis: Toward High-Dimensional ABC
    Nott, D. J.
    Fan, Y.
    Marshall, L.
    Sisson, S. A.
    JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2014, 23 (01) : 65 - 86
  • [3] Conditional Approximate Bayesian Computation: A New Approach for Across-Site Dependency in High-Dimensional Mutation-Selection Models
    Laurin-Lemay, Simon
    Rodrigue, Nicolas
    Lartillot, Nicolas
    Philippe, Herve
    MOLECULAR BIOLOGY AND EVOLUTION, 2018, 35 (11) : 2819 - 2834
  • [4] ABC-CDE: Toward Approximate Bayesian Computation With Complex High-Dimensional Data and Limited Simulations
    Izbicki, Rafael
    Lee, Ann B.
    Pospisil, Taylor
    JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 2019, 28 (03) : 481 - 492
  • [5] A scalable approximate Bayesian inference for high-dimensional Gaussian processes
    Fradi, Anis
    Samir, Chafik
    Bachoc, Francois
    COMMUNICATIONS IN STATISTICS-THEORY AND METHODS, 2022, 51 (17) : 5937 - 5956
  • [6] High-Dimensional Density Ratio Estimation with Extensions to Approximate Likelihood Computation
    Izbicki, Rafael
    Lee, Ann B.
    Schafer, Chad M.
    ARTIFICIAL INTELLIGENCE AND STATISTICS, VOL 33, 2014, 33 : 420 - 429
  • [7] New approach to Bayesian high-dimensional linear regression
    Jalali, Shirin
    Maleki, Arian
    INFORMATION AND INFERENCE-A JOURNAL OF THE IMA, 2018, 7 (04) : 605 - 655
  • [8] High-Dimensional Bayesian Geostatistics
    Banerjee, Sudipto
    BAYESIAN ANALYSIS, 2017, 12 (02): : 583 - 614
  • [9] Wavelet-based Bayesian approximate kernel method for high-dimensional data analysis
    Guo, Wenxing
    Zhang, Xueying
    Jiang, Bei
    Kong, Linglong
    Hu, Yaozhong
    COMPUTATIONAL STATISTICS, 2024, 39 (04) : 2323 - 2341
  • [10] Wavelet-based Bayesian approximate kernel method for high-dimensional data analysis
    Wenxing Guo
    Xueying Zhang
    Bei Jiang
    Linglong Kong
    Yaozhong Hu
    Computational Statistics, 2024, 39 : 2323 - 2341