Development of a set of SNP markers for population genetics of the red gorgonian (Paramuricea clavata), an emblematic species of the Mediterranean coralligenous

被引：2
|
作者：
Padron, M. [1 ]
Milhes, M. [2 ]
Massot, M. [3 ]
Guichoux, E. [3 ]
机构：
[1] Sorbonne Univ, Lab Ecogeochim Environm Benth, CNRS, UMR 8222, F-66650 Banyuls Sur Mer, France
[2] INRA, GeT PlaGe, Genotoul, F-31326 Castanet Tolosan, France
[3] Univ Bordeaux, BIOGECO, INRAE, F-33610 Cestas, France
来源：
CONSERVATION GENETICS RESOURCES | 2020年 / 12卷 / 04期
关键词：
Paramuricea clavata; Single nucleotide polymorphism; MassARRAY;
D O I：
10.1007/s12686-020-01139-7
中图分类号：
X176 [生物多样性保护];
学科分类号：
090705 ;
摘要：
Transcriptome sequencing was used for the development of single nucleotide polymorphisms (SNP) for the red gorgonian (Paramuricea clavata). A total of 20,736 SNPs were identified, and 1718 had a coverage of over 100 reads. Of the 480 SNPs tested, 347 SNPs were successfully genotyped at 95 samples from the NW Mediterranean using a MassARRAY System. This set of markers will be of great value for population genetics and phylogeography.
引用
收藏
页码：521 / 523
页数：3
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