Local Structure and Dynamics of Hydration Water in Intrinsically Disordered Proteins

被引:40
|
作者
Rani, Pooja [1 ]
Biswas, Parbati [1 ]
机构
[1] Univ Delhi, Dept Chem, Delhi 110007, India
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2015年 / 119卷 / 34期
关键词
MOLECULAR-DYNAMICS; NEUTRON-SCATTERING; CRYSTAL-STRUCTURES; ALPHA-SYNUCLEIN; FORCE-FIELDS; LIQUID WATER; SIMULATIONS; RELAXATION; RESOLUTION; SYSTEMS;
D O I
10.1021/jp511961c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Hydration water around protein surface plays a key role in structure, folding and dynamics of proteins. Intrinsically disordered proteins lack secondary and/or tertiary structure in their native state. Thus, characterizing the local structure and dynamics of hydration water around disordered proteins is challenging for both experimentalists and theoreticians. The local structure, orientation and dynamics of hydration water in the vicinity of intrinsically disordered proteins is investigated through molecular dynamics simulations. The analysis of the hydration capacity reveals that the disordered proteins have much larger binding capacity for hydration water than globular proteins. The surface and radial distribution of water molecules around the disordered proteins depict a similar trend. The local structure of the hydration water evaluated in terms of the tetrahedral order parameter, shows a higher order among the water molecules surrounding disordered proteins/regions. The residence time of water molecules clearly exhibits slow dynamics of hydration water around the surface of disordered proteins/regions as compared to globular proteins. The orientation of water molecules is found to be distinctly different for ordered and disordered proteins/regions. This analysis provides a better insight into the structure around disordered proteins. and dynamics of hydration water
引用
下载
收藏
页码:10858 / 10867
页数:10
相关论文
共 50 条
  • [1] Structure and Dynamics of Intrinsically Disordered Proteins
    Fu, Biao
    Vendruscolo, Michele
    INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 35 - 48
  • [2] Prying into Hydration Water in Amyloidogenic Intrinsically Disordered Proteins
    Mukhopadhyay, Samrat
    Arya, Shruti
    Bhasne, Karishma
    Dogra, Priyanka
    Singh, Avinash K.
    Khan, Tuhin
    Datta, Anindya
    Das, Payel
    BIOPHYSICAL JOURNAL, 2018, 114 (03) : 586A - 586A
  • [3] Hydration Water Distribution around Intrinsically Disordered Proteins
    Aggarwal, Leena
    Biswas, Parbati
    JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (15): : 4206 - 4218
  • [4] Diffusion of Hydration Water around Intrinsically Disordered Proteins
    Rani, Pooja
    Biswas, Parbati
    JOURNAL OF PHYSICAL CHEMISTRY B, 2015, 119 (42): : 13262 - 13270
  • [5] Lipidation Alters the Structure and Hydration of Myristoylated Intrinsically Disordered Proteins
    Ji, Jingjing
    Hossain, Md Shahadat
    Krueger, Emily N.
    Zhang, Zhe
    Nangia, Shivangi
    Carpentier, Britnie
    Martel, Mae
    Nangia, Shikha
    Mozhdehi, Davoud
    BIOMACROMOLECULES, 2023, 24 (03) : 1244 - 1257
  • [6] Intrinsically Disordered Proteins: Methods for Structure and Dynamics Studies
    Showalter, Scott A.
    EMAGRES, 2014, 3 (02): : 181 - 189
  • [7] Dynamical Coupling of Intrinsically Disordered Proteins and Their Hydration Water: Comparison with Folded Soluble and Membrane Proteins
    Gallat, F. -X.
    Laganowsky, A.
    Wood, K.
    Gabel, F.
    van Eijck, L.
    Wuttke, J.
    Moulin, M.
    Haertlein, M.
    Eisenberg, D.
    Colletier, J. -P.
    Zaccai, G.
    Weik, M.
    BIOPHYSICAL JOURNAL, 2012, 103 (01) : 129 - 136
  • [8] Dynamics and interactions of intrinsically disordered proteins
    Arai, Munehito
    Suetaka, Shunji
    Ooka, Koji
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2024, 84
  • [9] Translational diffusion of hydration water correlates with functional motions in folded and intrinsically disordered proteins
    Giorgio Schirò
    Yann Fichou
    Francois-Xavier Gallat
    Kathleen Wood
    Frank Gabel
    Martine Moulin
    Michael Härtlein
    Matthias Heyden
    Jacques-Philippe Colletier
    Andrea Orecchini
    Alessandro Paciaroni
    Joachim Wuttke
    Douglas J. Tobias
    Martin Weik
    Nature Communications, 6
  • [10] Accelerated Amyloid Aggregation Dynamics of Intrinsically Disordered Proteins in Heavy Water
    Son, Myung Kook
    Im, Dongjoon
    Hyun, Da Gyeong
    Kim, Soohyeong
    Chun, So Yeon
    Choi, Jeong-Mo
    Choi, Tae Su
    Cho, Minhaeng
    Kwak, Kyungwon
    Kim, Hugh I.
    Journal of Physical Chemistry Letters, 2024, 15 (47): : 11823 - 11829