A human phenotype ontology (HPO)-driven whole-genome analysis framework for effective identification of pathogenic regulatory variants in Mendelian disease

被引:0
|
作者
Robinson, P. N. [1 ]
Schubach, M. [1 ]
Jacobsen, J. O. B. [2 ,3 ]
Koehler, S. [1 ]
Zemojtel, T. [1 ]
Spielmann, M. [1 ]
Jaeger, M. [1 ]
Hochheiser, H. [4 ]
Washington, N. L. [5 ]
Haendel, M. A. [6 ]
Mungall, C. J. [5 ]
Lewis, S. E. [5 ]
Groza, T. [7 ]
Valentini, G. [8 ]
Smedley, D. [3 ]
机构
[1] Charite Univ Med Berlin, Berlin, Germany
[2] Wellcome Trust Sanger Inst, Skarnes Fac Grp, Hinxton CB10 1SA, England
[3] Univ Pittsburgh, Dept Biomed Informat, Pittsburgh, PA 15206 USA
[4] Univ Pittsburgh, Intelligent Syst Program, Pittsburgh, PA 15206 USA
[5] Lawrence Berkeley Natl Lab, Div Environm Genom & Syst Biol, Berkeley, CA 94720 USA
[6] Oregon Hlth & Sci Univ, Dept Med Informat & Clin Epidemiol, Portland, OR 97239 USA
[7] Garvan Inst Med Res, Kinghorn Ctr Clin Genom, Darlinghurst, NSW 2010, Australia
[8] Univ Milan, Dept Comp Sci, I-20126 Milan, Italy
关键词
D O I
暂无
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
S08
引用
收藏
页码:S2 / S3
页数:2
相关论文
共 32 条
  • [1] A Whole-Genome Analysis Framework for Effective Identification of Pathogenic Regulatory Variants in Mendelian Disease
    Smedley, Damian
    Schubach, Max
    Jacobsen, Julius O. B.
    Koehler, Sebastian
    Zemojtel, Tomasz
    Spielmann, Malte
    Jaeger, Marten
    Hochheiser, Harry
    Washington, Nicole L.
    McMurry, Julie A.
    Haendel, Melissa A.
    Mungall, Christopher J.
    Lewis, Suzanna E.
    Groza, Tudor
    Valentini, Giorgio
    Robinson, Peter N.
    AMERICAN JOURNAL OF HUMAN GENETICS, 2016, 99 (03) : 595 - 606
  • [2] Testing the use of Human Phenotype Ontology (HPO) terms for the identification of causal variants in clinical exomes
    Gomez Sanchez, C.
    Romera, A.
    Montoya, J.
    Cantalapiedra, D.
    Moya, C.
    Casan, C.
    Arilla Codonier, A.
    Lois, S.
    Valenzuela, I.
    Lopez-Grondona, F.
    Cueto-Gonzalez, A.
    Abuli, A.
    Serra, C.
    Codina, M.
    Santillan, S.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2019, 27 : 1645 - 1645
  • [3] GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants in whole-genome sequencing
    Giacopuzzi, Edoardo
    Popitsch, Niko
    Taylor, Jenny C.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 496 - 496
  • [4] Whole-Genome Sequencing of a Single Proband Together with Linkage Analysis Identifies a Mendelian Disease Gene
    Sobreira, Nara L. M.
    Cirulli, Elizabeth T.
    Avramopoulos, Dimitrios
    Wohler, Elizabeth
    Oswald, Gretchen L.
    Stevens, Eric L.
    Ge, Dongliang
    Shianna, Kevin V.
    Smith, Jason P.
    Maia, Jessica M.
    Gumbs, Curtis E.
    Pevsner, Jonathan
    Thomas, George
    Valle, David
    Hoover-Fong, Julie E.
    Goldstein, David B.
    PLOS GENETICS, 2010, 6 (06): : 1 - 6
  • [5] An integrative functional genomics framework for effective identification of novel regulatory variants in genome–phenome studies
    Junfei Zhao
    Feixiong Cheng
    Peilin Jia
    Nancy Cox
    Joshua C. Denny
    Zhongming Zhao
    Genome Medicine, 10
  • [6] Whole-genome sequencing for identification of Mendelian disorders in critically ill infants: a retrospective analysis of diagnostic and clinical findings
    Willig, Laurel K.
    Petrikin, Josh E.
    Smith, Laurie D.
    Saunders, Carol J.
    Thiffault, Isabelle
    Miller, Neil A.
    Soden, Sarah E.
    Cakici, Julie A.
    Herd, Suzanne M.
    Twist, Greyson
    Noll, Aaron
    Creed, Mitchell
    Alba, Patria M.
    Carpenter, Shannon L.
    Clements, Mark A.
    Fischer, Ryan T.
    Hays, J. Allyson
    Kilbride, Howard
    McDonough, Ryan J.
    Rosterman, Jamie L.
    Tsai, Sarah L.
    Zellmer, Lee
    Farrow, Emily G.
    Kingsmore, Stephen F.
    LANCET RESPIRATORY MEDICINE, 2015, 3 (05): : 377 - 387
  • [7] Prioritizing Disease-Linked Variants, Genes, and Pathways with an Interactive Whole-Genome Analysis Pipeline
    Lee, In-Hee
    Lee, Kyungjoon
    Hsing, Michael
    Choe, Yongjoon
    Park, Jin-Ho
    Kim, Shu Hee
    Bohn, Justin M.
    Neu, Matthew B.
    Hwang, Kyu-Baek
    Green, Robert C.
    Kohane, Isaac S.
    Kong, Sek Won
    HUMAN MUTATION, 2014, 35 (05) : 537 - 547
  • [8] An integrative functional genomics framework for effective identification of novel regulatory variants in genome-phenome studies
    Zhao, Junfei
    Cheng, Feixiong
    Jia, Peilin
    Cox, Nancy
    Denny, Joshua C.
    Zhao, Zhongming
    GENOME MEDICINE, 2018, 10
  • [9] Genome-Wide Identification and Analysis of Variants in Domestic and Wild Bactrian Camels Using Whole-Genome Sequencing Data
    Hedayat-Evrigh, Nemat
    Khalkhali-Evrigh, Reza
    Bakhtiarizadeh, Mohammad Reza
    INTERNATIONAL JOURNAL OF GENOMICS, 2020, 2020
  • [10] GREEN-DB: a framework for the annotation and prioritization of non-coding regulatory variants from whole-genome sequencing data
    Giacopuzzi, Edoardo
    Popitsch, Niko
    Taylor, Jenny C.
    NUCLEIC ACIDS RESEARCH, 2022, 50 (05) : 2522 - 2535