BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

被引:163
|
作者
Peng, Hanchuan [1 ]
Hawrylycz, Michael [1 ]
Roskams, Jane [1 ]
Hill, Sean [2 ]
Spruston, Nelson [3 ]
Meijering, Erik [4 ]
Ascoli, Giorgio A. [5 ]
机构
[1] Allen Inst Brain Sci, Seattle, WA 98103 USA
[2] Ctr Brain Simulat, CH-1202 Geneva, Switzerland
[3] Howard Hughes Med Inst, Ashburn, VA 20147 USA
[4] Erasmus MC, NL-3000 CA Rotterdam, Netherlands
[5] George Mason Univ, Krasnow Inst Adv Study, Fairfax, VA 22030 USA
关键词
DIGITAL RECONSTRUCTIONS; VISUALIZATION;
D O I
10.1016/j.neuron.2015.06.036
中图分类号
Q189 [神经科学];
学科分类号
071006 ;
摘要
Understanding the structure of single neurons is critical for understanding how they function within neural circuits. BigNeuron is a new community effort that combines modern bioimaging informatics, recent leaps in labeling and microscopy, and the widely recognized need for openness and standardization to provide a community resource for automated reconstruction of dendritic and axonal morphology of single neurons.
引用
收藏
页码:252 / 256
页数:5
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