Complete chloroplast genome sequence of turnip (Brassica rapa. ssp.rapa): genome structure and phylogenetic analysis

被引:7
|
作者
Han, Rui [1 ]
Tian, Minyu [1 ]
Zhang, Guangnan [1 ,2 ]
Shao, Dengkui [1 ,2 ]
Ren, Yanjing [1 ,2 ]
机构
[1] Qinghai Univ, Qinghai Acad Agr & Forestry Sci, Acad Agr & Forestry Sci, Xining, Peoples R China
[2] Qinghai Key Lab Vegetable Genet & Physiol, Xining, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2020年 / 5卷 / 03期
关键词
Turnip; chloroplast genome; genome structure; phylogenetic analysis;
D O I
10.1080/23802359.2020.1829124
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Turnip (Brassica rapa.ssp.rapa) is considered worldwide to be one of the most important leaf and root vegetable crops in the Brassicaceae family. However, to date, few chloroplast (cp) genomic resources have been reported for this genus. Here, we determined the complete cp genome sequences ofBrassica rapassp.rapa.A 153,621 bp quadripartite cycle without any gap was obtained with a large single-copy region (LSC) of 83,512 bp, a small single-copy region (SSC) of 17,683 bp, and two inverted repeat (IR), IRa and IRb of 26,213 bp. A total of 132 genes were identified, including 87 protein-coding genes (PCG), 37 transfer RNA (tRNA), and 8 ribosomal RNA (rRNA). The phylogenetic analysis of ten other crops selected showed that the turnip was most closely related to theBrassica rapa.
引用
收藏
页码:3573 / 3575
页数:3
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