Visualizing next-generation sequencing data with JBrowse

被引：53
|
作者：
Westesson, Oscar [1 ]
Skinner, Mitchell [1 ]
Holmes, Ian [1 ]
机构：
[1] Univ Calif Berkeley, Berkeley, CA USA
来源：
BRIEFINGS IN BIOINFORMATICS | 2013年 / 14卷 / 02期
基金：
美国国家卫生研究院;
关键词：
genome browser; web; next-generation sequencing;
D O I：
10.1093/bib/bbr078
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
JBrowse is a web-based genome browser, allowing many sources of data to be visualized, interpreted and navigated in a coherent visual framework. JBrowse uses efficient data structures, pre-generation of image tiles and client-side rendering to provide a fast, interactive browsing experience. Many of JBrowse's design features make it well suited for visualizing high-volume data, such as aligned next-generation sequencing reads.
引用
收藏
页码：172 / 177
页数：6
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