ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets

被引：20
|
作者：
Fernandez Navarro, Jose [1 ]
Lundeberg, Joakim [1 ]
Stahl, Patrik L. [1 ]
机构：
[1] KTH Royal Inst Technol, Dept Gene Technol, Sch Engn Sci Chem Biotechnol & Hlth, Sci Life Lab, Solna, Sweden
来源：
BIOINFORMATICS | 2019年 / 35卷 / 06期
基金：
瑞典研究理事会;
关键词：
GENE-EXPRESSION;
D O I：
10.1093/bioinformatics/bty714
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation Spatial Transcriptomics (ST) is a technique that combines high-resolution imaging with spatially resolved transcriptome-wide sequencing. This novel type of data opens up many possibilities for analysis and visualization, most of which are either not available with standard tools or too complex for normal users. Results Here, we present a tool, ST Viewer, which allows real-time interaction, analysis and visualization of Spatial Transcriptomics datasets through a seamless and smooth user interface. Availability and implementation The ST Viewer is open source under a MIT license and it is available at https://github.com/SpatialTranscriptomicsResearch/st_viewer. Supplementary information Supplementary data are available at Bioinformatics online.
引用
收藏
页码：1058 / 1060
页数：3
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