The liver transcriptome of suckermouth armoured catfish (Pterygoplichthys anisitsi, Loricariidae): Identification of expansions in defensome gene families

被引:11
|
作者
Parente, Thiago E. [1 ,2 ,5 ]
Moreira, Daniel A. [1 ]
Magalhaes, Maithe G. P. [1 ]
de Andrade, Paula C. C. [1 ]
Furtado, Carolina [3 ]
Haas, Brian J. [4 ]
Stegeman, John J. [5 ]
Hahn, Mark E. [5 ]
机构
[1] Fiocruz MS, Fundacao Oswaldo Cruz, ENSP, Lab Toxicol Ambiental, BR-21040900 Rio De Janeiro, Brazil
[2] Fiocruz MS, Fundacao Oswaldo Cruz, Inst Oswaldo Cruz, Lab Genet Mol Microrganismos, BR-21040900 Rio De Janeiro, Brazil
[3] Inst Nacl Canc INCA, Unidade Genom, BR-20230130 Rio De Janeiro, Brazil
[4] Broad Inst Massachusetts Inst Technol & Harvard, Cambridge, MA 02142 USA
[5] Woods Hole Oceanog Inst, Woods Hole, MA 02543 USA
关键词
RNA-Seq; P450; SULT; ABC transporters; Nuclear receptors; SILURIFORMES LORICARIIDAE; SAILFIN CATFISH; SEQUENCE ALIGNMENT; NUCLEAR RECEPTORS; MARIKINA RIVER; CYTOCHROME-P450; DISJUNCTIVUS; EXPRESSION; EXPOSURE; ACCURATE;
D O I
10.1016/j.marpolbul.2016.12.012
中图分类号
X [环境科学、安全科学];
学科分类号
08 ; 0830 ;
摘要
Pterygoplichthys is a genus of related suckermouth armoured catfishes native to South America, which have invaded tropical and subtropical regions worldwide. Physiological features, including an augmented resistance to organic xenobiotics, may have aided their settlement in foreign habitats. The liver transcriptome of Pterygoplichthys anisitsi was sequenced and used to characterize the diversity of mRNAs potentially involved in the responses to natural and anthropogenic chemicals. In total, 66,642 transcripts were assembled. Among the identified defensome genes, cytochromes P450 (CYP) were the most abundant, followed by sulfotransferases (SULT), nuclear receptors (NR) and ATP binding cassette transporters (ABC). A novel expansion in the CYP2Y subfamily was identified, as well as an independent expansion of the CYP2AAs. Two expansions were also observed among SULT1. Thirty-two transcripts were classified into twelve subfamilies of NR, while 21 encoded ABC transporters. The diversity of defensome transcripts sequenced herein could contribute to this species' resistance to organic xenobiotics. (C) 2016 Elsevier Ltd. All rights reserved.
引用
收藏
页码:352 / 361
页数:10
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