Characterization and Comparison of Two Complete Plastomes of Rosaceae Species (Potentilla dickinsiivar.glabrataandSpiraeainsularis) Endemic to Ulleung Island, Korea

被引:14
|
作者
Yang, JiYoung [1 ]
Kang, Gi-Ho [2 ]
Pak, Jae-Hong [1 ]
Kim, Seung-Chul [3 ]
机构
[1] Kyungpook Natl Univ, Sch Life Sci, Res Inst Dok Do & Ulleung Do Isl, Dept Biol, 80 Daehak Ro, Daegu 41566, Gyeongsangbuk D, South Korea
[2] Baekdudaegan Natl Arboretum, 1501 Chunyang Ro, Bonghwa Gun 36209, Gyeongsangbuk D, South Korea
[3] Sungkyunkwan Univ, Dept Biol Sci, 2066 Seobu Ro, Suwon 16419, Gyeonggi Do, South Korea
基金
新加坡国家研究基金会;
关键词
Potentilla dickinsiivar; glabrata; Spiraea insularis; Rosaceae; Ulleung Island; plastome; anagenetic speciation; COMPLETE CHLOROPLAST GENOME; PHYLOGENETIC ANALYSIS; ULLUNG ISLAND; ANAGENETIC SPECIATION; SEQUENCE; GENES; DIVERSIFICATION; SAPINDACEAE; EVOLUTION; SELECTION;
D O I
10.3390/ijms21144933
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Potentilla dickinsiivar.glabrataandSpiraea insularisin the family Rosaceae are species endemic to Ulleung Island, Korea, the latter of which is listed as endangered. In this study, we characterized the complete plastomes of these two species and compared these with previously reported plastomes of other Ulleung Island endemic species of Rosaceae (Cotoneaster wilsonii,Prunus takesimensis,Rubus takesimensis, andSorbus ulleungensis). The highly conserved complete plastomes ofP. dickinsiivar.glabrataandS. insularisare 158,637 and 155,524 base pairs with GC contents of 37% and 36.9%, respectively. Comparative phylogenomic analysis identified three highly variable intergenic regions (trnT-UGU/trnL-UAA,rpl32/trnL-UAG, andndhF/rpl32) and one variable genic region (ycf1). Only 6 of the 75 protein-coding genes have been subject to strong positive selection. Phylogenetic analysis of 23 representative plastomes within the Rosaceae supported the monophyly ofPotentillaand the sister relationship betweenPotentillaandFragariaand indicated thatS. insularisis sister to a clade containingCotoneaster,Malus,Pyrus, andSorbus. The plastome resources generated in this study will contribute to elucidating the plastome evolution of insular endemic Rosaceae on Ulleung Island and also in assessing the genetic consequences of anagenetic speciation for various endemic lineages on the island.
引用
收藏
页码:1 / 15
页数:14
相关论文
共 8 条
  • [1] The plastome sequence of Ulleung Rowan, Sorbus ulleungensis (Rosaceae), a new endemic species on Ulleung island, Korea
    Gil, Hee-Young
    Kim, Seung-Chul
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 284 - 285
  • [2] Complete chloroplast genome of Ulleung Island endemic flowering cherry, Prunus takesimensis (Rosaceae), in Korea
    Cho, Myong-Suk
    Yang, Ji Young
    Kim, Seung-Chul
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (01): : 274 - 275
  • [3] Characterization of the complete chloroplast genome sequence of Potentilla gageodoensis (rosaceae), endemic to the continental islands of Korea
    Kim, Seon-Hee
    Shukhertei, Ariun
    Yang, JiYoung
    Kim, Seung-Chul
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (04): : 678 - 680
  • [4] The complete plastome sequence of Rubus takesimensis endemic to Ulleung Island, Korea: Insights into molecular evolution of anagenetically derived species in Rubus (Rosaceae)
    Yang, Ji Young
    Pak, Jae-Hong
    Kim, Seung-Chul
    [J]. GENE, 2018, 668 : 221 - 228
  • [5] Complete chloroplast genome of Fagus multinervis, a beech species endemic to Ulleung Island in South Korea
    Park, Jong-Soo
    Jin, Dong-Pil
    Park, Jong-Won
    Choi, Byoung-Hee
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1698 - 1699
  • [6] The complete plastid genome sequence of Chrysanthemum lucidum (Asteraceae): an endemic species of Ulleung Island of Korea
    Kim, Jung Sung
    Lee, Woong
    Pak, Jae-Hong
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 476 - 477
  • [7] Characterization of the complete chloroplast genome of Ulleung-do Island endemic, Zabelia insularis (Caprifoliaceae), in Korea
    Lee, Woong
    Yang, Ji Young
    Kim, Seung-Chul
    Pak, Jae-Hong
    [J]. MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 4134 - 4135
  • [8] Wasabi Gone Wild? Origin and Characterization of the Complete Plastomes of Ulleung Island Wasabi (Eutrema japonicum; Brassicaceae) and Other Cultivars in Korea
    Yang, Jiyoung
    Park, Cheon Gyoo
    Cho, Myong-Suk
    Kim, Seung-Chul
    [J]. GENES, 2024, 15 (04)