Selective Isotopic Unlabeling of Proteins Using Metabolic Precursors: Application to NMR Assignment of Intrinsically Disordered Proteins

被引:21
|
作者
Rasia, Rodolfo M. [2 ]
Brutscher, Bernhard [1 ,3 ,4 ]
Plevin, Michael J. [1 ,3 ,4 ]
机构
[1] CEA, Inst Biol Struct Jean Pierre Ebel, F-38027 Grenoble 1, France
[2] Inst Biol Mol & Celular Rosario IBR CONICET, Rosario, Argentina
[3] CNRS, Inst Biol Struct Jean Pierre Ebel, F-38027 Grenoble 1, France
[4] Univ Grenoble 1, Inst Biol Struct Jean Pierre Ebel, F-38027 Grenoble 1, France
关键词
isotope labeling; NMR spectroscopy; residue-type identification; resonance assignment; spectral overlap; AMINO-ACID-TYPE; TRIPLE-RESONANCE EXPERIMENTS; MOLECULAR-WEIGHT PROTEINS; LABELED PROTEINS; SPECTRA; SPECTROSCOPY; RESIDUES; N-15; C-13; ROBUST;
D O I
10.1002/cbic.201100678
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Selective isotopic unlabeling of proteins can provide important residue-type information as well as reduce congestion of NMR spectra. However, metabolic scrambling often complicates the final isotope-labeling pattern. Here, an array of metabolic precursors is used to perform robust, residue-specific unlabeling of proteins. The resulting isotopic-labeling patterns are predictable and nicely complement NMR experiments that differentiate residue types. This approach has widespread applications, but it is particularly relevant for proteins that lack sequence complexity or a defined tertiary structure.
引用
收藏
页码:732 / 739
页数:8
相关论文
共 50 条
  • [1] An Approach to NMR Assignment of Intrinsically Disordered Proteins
    Goradia, Nishit
    Wiedemann, Christoph
    Herbst, Christian
    Goerlach, Matthias
    Heinemann, Stefan H.
    Ohlenschlaeger, Oliver
    Ramachandran, Ramadurai
    [J]. CHEMPHYSCHEM, 2015, 16 (04) : 739 - 746
  • [2] Application of NMR to studies of intrinsically disordered proteins
    Gibbs, Eric B.
    Cook, Erik C.
    Showalter, Scott A.
    [J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2017, 628 : 57 - 70
  • [3] An assignment of intrinsically disordered regions of proteins based on NMR structures
    Ota, Motonori
    Koike, Ryotaro
    Amemiya, Takayuki
    Tenno, Takeshi
    Romero, Pedro R.
    Hiroaki, Hidekazu
    Dunker, A. Keith
    Fukuchi, Satoshi
    [J]. JOURNAL OF STRUCTURAL BIOLOGY, 2013, 181 (01) : 29 - 36
  • [4] Rapid NMR Assignments of Proteins by Using Optimized Combinatorial Selective Unlabeling
    Dubey, Abhinav
    Kadumuri, Rajashekar Varma
    Jaipuria, Garima
    Vadrevu, Ramakrishna
    Atreya, Hanudatta S.
    [J]. CHEMBIOCHEM, 2016, 17 (04) : 334 - 340
  • [5] Stabilization of Mineral Precursors by Intrinsically Disordered Proteins
    Rao, Ashit
    Drechsler, Markus
    Schiller, Stefan
    Scheffner, Martin
    Gebauer, Denis
    Coelfen, Helmut
    [J]. ADVANCED FUNCTIONAL MATERIALS, 2018, 28 (37)
  • [6] Ensemble Calculation for Intrinsically Disordered Proteins Using NMR Parameters
    Kragelj, Jaka
    Blackledge, Martin
    Jensen, Malene Ringkjobing
    [J]. INTRINSICALLY DISORDERED PROTEINS STUDIED BY NMR SPECTROSCOPY, 2015, 870 : 123 - 147
  • [7] Intrinsically disordered proteins studied by NMR spectroscopy
    Schiavina, Marco
    Bracaglia, Lorenzo
    Bolognesi, Tessa
    Rodella, Maria Anna
    Tagliaferro, Giuseppe
    Tino, Angela Sofia
    Pierattelli, Roberta
    Felli, Isabella C.
    [J]. JOURNAL OF MAGNETIC RESONANCE OPEN, 2024, 18
  • [8] 13C APSY-NMR for sequential assignment of intrinsically disordered proteins
    Murrali, Maria Grazia
    Schiavina, Marco
    Sainati, Valerio
    Bermel, Wolfgang
    Pierattelli, Roberta
    Felli, Isabella C.
    [J]. JOURNAL OF BIOMOLECULAR NMR, 2018, 70 (03) : 167 - 175
  • [9] ncIDP-assign: a SPARKY extension for the effective NMR assignment of intrinsically disordered proteins
    Tamiola, Kamil
    Mulder, Frans A. A.
    [J]. BIOINFORMATICS, 2011, 27 (07) : 1039 - 1040
  • [10] 13C APSY-NMR for sequential assignment of intrinsically disordered proteins
    Maria Grazia Murrali
    Marco Schiavina
    Valerio Sainati
    Wolfgang Bermel
    Roberta Pierattelli
    Isabella C. Felli
    [J]. Journal of Biomolecular NMR, 2018, 70 : 167 - 175