The Scalable Brain Atlas: Instant Web-Based Access to Public Brain Atlases and Related Content

被引:197
|
作者
Bakker, Rembrandt [1 ,2 ,3 ,4 ,5 ]
Tiesinga, Paul [1 ]
Kotter, Rolf [6 ]
机构
[1] Radboud Univ Nijmegen, Dept Neuroinformat, Donders Inst Brain Cognit & Behav, NL-6525 ED Nijmegen, Netherlands
[2] Inst Neurosci & Med INM 6, Julich, Germany
[3] Inst Adv Simulat IAS 6, Julich, Germany
[4] Julich Res Ctr, Julich, Germany
[5] JARA, Julich, Germany
[6] Radboud Univ Nijmegen, Med Ctr, Donders Inst Brain Cognit & Behav, Ctr Neurosci, NL-6525 ED Nijmegen, Netherlands
关键词
Online Brain Atlas; Comparative anatomy; Macaque; Mouse; Rat; Human; Marmoset; Scalable vector graphics; Structural connectivity; Fiducial points; WAXHOLM SPACE; MACAQUE; NEUROSCIENCE; FRAMEWORK; ONTOLOGY;
D O I
10.1007/s12021-014-9258-x
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
The Scalable Brain Atlas (SBA) is a collection of web services that provide unified access to a large collection of brain atlas templates for different species. Its main component is an atlas viewer that displays brain atlas data as a stack of slices in which stereotaxic coordinates and brain regions can be selected. These are subsequently used to launch web queries to resources that require coordinates or region names as input. It supports plugins which run inside the viewer and respond when a new slice, coordinate or region is selected. It contains 20 atlas templates in six species, and plugins to compute coordinate transformations, display anatomical connectivity and fiducial points, and retrieve properties, descriptions, definitions and 3d reconstructions of brain regions. The ambition of SBA is to provide a unified representation of all publicly available brain atlases directly in the web browser, while remaining a responsive and light weight resource that specializes in atlas comparisons, searches, coordinate transformations and interactive displays.
引用
收藏
页码:353 / 366
页数:14
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