Currently, the one of great threats to tropical biodiversity is the conversion of natural ecosystems to agriculture, and this threat is particularly critical on Hainan, the largest tropical island in China and a global biodiversity hotspot. Rubber (Hevea brasiliensis) has been planted on Hainan since the 1950s, resulting in extensive replacement of native forest, and the rate of this transformation has increased with latex prices since the 1990s. Rubber plantations now cover ca. 506,680 ha on Hainan and reach ca 1,000 m in elevation. To investigate the effect of this land-use change, we compared avian communities between a rubber plantation and a native secondary semi-deciduous monsoon forest. We found that species richness was higher in the native forest than in rubber, and that community composition differed greatly between the two habitats. No strict frugivores were recorded in rubber and no granivores in semi-deciduous monsoon forest. In both richness and abundance, more nectarivores and fewer insectivores occurred in rubber than in the native forest. Some common forest species, as well as protected species, were found only in native forest, including Hainan Partridge (Arborophila ardens), Red Junglefowl (Gallus gallus), Emerald Dove (Chalcophaps indica), Black-browed Barbet (Megalaima oorti), Blue-rumped Pitta (Pitta soror), Puff-throated Bulbul (Alophoixus pallidus), and Chestnut Bulbul (Hemixos castanonotus). Although ten babbler species were found in the native forest, only two were in rubber. Among the species missing in rubber was the endemic Hainan species Grey Laughingthrush (Garrulax maesi). Its endangerment through habitat conversion is of particular conservation concern.