Multiple Alignment of Structures Using Center Of ProTeins

被引：1

作者：

Roy, Kaushik ^{[1
]}

Panigrahi, Satish Chandra ^{[1
]}

Mukhopadhyay, Asish ^{[1
]}

机构：

[1] Univ Windsor, Sch Comp Sci, Windsor, ON N9B 3P4, Canada

来源：

BIOINFORMATICS RESEARCH AND APPLICATIONS (ISBRA 2015) | 2015年 / 9096卷

关键词：

ALGORITHM; IDENTIFICATION; SIMILARITIES; SEQUENCE; MOTIFS;

D O I：

10.1007/978-3-319-19048-8_24

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Multiple Structure Alignment (MStA) is a fundamental problem in Computational Biology and proteomics in particular. Therefore, a number of algorithms have been proposed, chief among which are MUSTANG, POSA, MultiProt, CE-MC. In this paper we propose a new algorithm MASCOT that imitates the center-star algorithm for multiple sequence alignment. We report the root mean square deviations (RMSD) and execution times for a large number of alignments and discuss their significance. We also include a comparison of the execution times of MASCOT with the well-known and widely-used algorithm MUSTANG.

引用

页码：284 / 296

页数：13

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