Efficient and Accurate Simulations of Vibrational and Electronic Spectra with Symmetry-Preserving Neural Network Models for Tensorial Properties

被引:59
|
作者
Zhang, Yaolong [1 ,2 ]
Ye, Sheng [3 ,4 ]
Zhang, Jinxiao [3 ,4 ]
Hu, Ce [1 ,2 ]
Jiang, Jun [3 ,4 ]
Jiang, Bin [1 ,2 ]
机构
[1] Univ Sci & Technol China, Hefei Natl Lab Phys Sci Microscale, Dept Chem Phys, Anhui Higher Educ Inst, Hefei 230026, Anhui, Peoples R China
[2] Univ Sci & Technol China, Key Lab Surface & Inteiface Chem & Energy Catalys, Anhui Higher Educ Inst, Hefei 230026, Anhui, Peoples R China
[3] Univ Sci & Technol China, Hefei Natl Lab Phys Sci Microscale, Dept Chem Phys, Hefei 230026, Anhui, Peoples R China
[4] Univ Sci & Technol China, Chinese Acad Sci, Ctr Excellence Nanosci, Hefei 230026, Anhui, Peoples R China
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2020年 / 124卷 / 33期
基金
国家重点研发计划; 中国国家自然科学基金;
关键词
D O I
10.1021/acs.jpcb.0c06926
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Machine learning has revolutionized the high-dimensional representations for molecular properties such as potential energy. However, there are scarce machine learning models targeting tensorial properties, which are rotationally covariant. Here, we propose tensorial neural network (NN) models to learn both tensorial response and transition properties in which atomic coordinate vectors are multiplied with scalar NN outputs or their derivatives to preserve the rotationally covariant symmetry. This strategy keeps structural descriptors symmetry invariant so that the resulting tensorial NN models are as efficient as their scalar counterparts. We validate the performance and universality of this approach by learning response properties of water oligomers and liquid water and transition dipole moment of a model structural unit of proteins. Machine-learned tensorial models have enabled efficient simulations of vibrational spectra of liquid water and ultraviolet spectra of realistic proteins, promising feasible and accurate spectroscopic simulations for biomolecules and materials.
引用
收藏
页码:7284 / 7290
页数:7
相关论文
共 11 条
  • [1] Novel symmetry-preserving neural network model for phylogenetic inference
    Tang, Xudong
    Zepeda-Nunez, Leonardo
    Yang, Shengwen
    Zhao, Zelin
    Solis-Lemus, Claudia
    BIOINFORMATICS ADVANCES, 2024, 4 (01):
  • [2] Towards accurate and efficient process simulations based on atomistic and neural network approaches
    Li, L.
    Agrawal, M.
    Yeh, S. Y.
    Lam, K. T.
    Wu, J.
    Magyari-Kope, B.
    2022 INTERNATIONAL ELECTRON DEVICES MEETING, IEDM, 2022,
  • [3] Symmetry preserving neural network models for spur gear static transmission error curves
    Sakaridis, E.
    Kalligeros, C.
    Papalexis, C.
    Kostopoulos, G.
    Spitas, V.
    MECHANISM AND MACHINE THEORY, 2023, 187
  • [4] Accurate and Efficient Multilevel Free Energy Simulations with Neural Network-Assisted Enhanced Sampling
    Yuan, Yuchen
    Cui, Qiang
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (16) : 5394 - 5406
  • [5] Interconvertibility of electronic and vibrational circular dichroism spectra of proteins: A test of principle using neural network mapping
    Univ of Illinois at Chicago, Chicago, United States
    Appl Spectrosc, 5 (658-668):
  • [6] Interconvertibility of electronic and vibrational circular dichroism spectra of proteins: A test of principle using neural network mapping
    Pancoska, P
    Janota, V
    Keiderling, TA
    APPLIED SPECTROSCOPY, 1996, 50 (05) : 658 - 668
  • [7] Molecular Dynamics with Constrained Nuclear Electronic Orbital Density Functional Theory: Accurate Vibrational Spectra from Efficient Incorporation of Nuclear Quantum Effects
    Xu, Xi
    Chen, Zehua
    Yang, Yang
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2022, 144 (09) : 4039 - 4046
  • [8] Efficient determination of the Hamiltonian and electronic properties using graph neural network with complete local coordinates
    Su, Mao
    Yang, Ji-Hui
    Xiang, Hong-Jun
    Gong, Xin-Gao
    MACHINE LEARNING-SCIENCE AND TECHNOLOGY, 2023, 4 (03):
  • [9] Accurate, affordable, and generalizable machine learning simulations of transition metal x-ray absorption spectra using the XANESNET deep neural network
    Rankine, C. D.
    Penfold, T. J.
    JOURNAL OF CHEMICAL PHYSICS, 2022, 156 (16):
  • [10] Toward accurate electronic, optical, and vibrational properties of hexagonal Si, Ge, and Si1-xGex alloys from first-principle simulations
    Bao, Nanyun
    Guo, Fangyu
    Kang, Dongdong
    Feng, Yexin
    Wang, Han
    Dai, Jiayu
    JOURNAL OF APPLIED PHYSICS, 2021, 129 (14)