Methods and open-source toolkit for analyzing and visualizing challenge results

被引:41
|
作者
Wiesenfarth, Manuel [1 ]
Reinke, Annika [2 ]
Landman, Bennett A. [3 ]
Eisenmann, Matthias [2 ]
Saiz, Laura Aguilera [2 ]
Cardoso, M. Jorge [4 ]
Maier-Hein, Lena [2 ]
Kopp-Schneider, Annette [1 ]
机构
[1] German Canc Res Ctr, Div Biostat, Neuenheimer Feld 581, D-69120 Heidelberg, Germany
[2] German Canc Res Ctr, Div Comp Assisted Med Intervent CAMI, Neuenheimer Feld 223, D-69120 Heidelberg, Germany
[3] Vanderbilt Univ, Elect Engn, 221 Kirkland Hall, Nashville, TN 37235 USA
[4] Kings Coll London, Sch Biomed Engn & Imaging Sci, London WC2R 2LS, England
关键词
SEGMENTATION; RANKINGS;
D O I
10.1038/s41598-021-82017-6
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Grand challenges have become the de facto standard for benchmarking image analysis algorithms. While the number of these international competitions is steadily increasing, surprisingly little effort has been invested in ensuring high quality design, execution and reporting for these international competitions. Specifically, results analysis and visualization in the event of uncertainties have been given almost no attention in the literature. Given these shortcomings, the contribution of this paper is two-fold: (1) we present a set of methods to comprehensively analyze and visualize the results of single-task and multi-task challenges and apply them to a number of simulated and real-life challenges to demonstrate their specific strengths and weaknesses; (2) we release the open-source framework challengeR as part of this work to enable fast and wide adoption of the methodology proposed in this paper. Our approach offers an intuitive way to gain important insights into the relative and absolute performance of algorithms, which cannot be revealed by commonly applied visualization techniques. This is demonstrated by the experiments performed in the specific context of biomedical image analysis challenges. Our framework could thus become an important tool for analyzing and visualizing challenge results in the field of biomedical image analysis and beyond.
引用
收藏
页数:15
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