From PROTAC to inhibitor: Structure-guided discovery of potent and orally bioavailable BET inhibitors

被引:2
|
作者
Koravovic, Mladen [1 ]
Mayasundari, Anand [2 ]
Tasic, Gordana [1 ]
Keramatnia, Fatemeh [2 ]
Stachowski, Timothy R. [2 ]
Cui, Huarui [3 ]
Chai, Sergio C. [2 ]
Jonchere, Barbara [4 ]
Yang, Lei [2 ]
Li, Yong [2 ]
Fu, Xiang [2 ]
Hiltenbrand, Ryan [5 ]
Paul, Leena [6 ]
Mishra, Vibhor [5 ]
Klco, Jeffery M. [5 ]
Roussel, Martine F. [4 ]
Pomerantz, William CK. [3 ]
Fischer, Marcus [2 ]
Rankovic, Zoran [2 ]
Savic, Vladimir [1 ]
机构
[1] Univ Belgrade, Fac Pharm, Dept Organ Chem, Vojvode Stepe 450, Belgrade 11221, Serbia
[2] St Jude Childrens Res Hosp, Dept Chem Biol & Therapeut, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[3] Univ Minnesota, Dept Chem, 207 Pleasant St SE, Minneapolis, MN 55455 USA
[4] St Jude Childrens Res Hosp, Dept Tumour Cell Biol, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[5] St Jude Childrens Res Hosp, Dept Pathol, 262 Danny Thomas Pl, Memphis, TN 38105 USA
[6] St Jude Childrens Res Hosp, Dept Dev Neurobiol, 262 Danny Thomas Pl, Memphis, TN 38105 USA
关键词
BET inhibitors; JQ1; Amides; ACETYL-LYSINE RECOGNITION; DRUG DISCOVERY; BROMODOMAIN PROTEINS; HISTONE ACETYLATION; PERMEABILITY; BIOISOSTERES; SOLUBILITY; MECHANISM; TARGETS; MOTIF;
D O I
10.1016/j.ejmech.2023.115246
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
An X-ray structure of a CLICK chemistry-based BET PROTAC bound to BRD2(BD2) inspired synthesis of JQ1 derived heterocyclic amides. This effort led to the discovery of potent BET inhibitors displaying overall improved profiles when compared to JQ1 and birabresib. A thiadiazole derived 1q (SJ1461) displayed excellent BRD4 and BRD2 affinity and high potency in the panel of acute leukaemia and medulloblastoma cell lines. A structure of 1q co-crystalised with BRD4-BD1 revealed polar interactions with the AZ/BC loops, in particular with Asn140 and Tyr139, rationalising the observed affinity improvements. In addition, exploration of pharmacokinetic properties of this class of compounds suggest that the heterocyclic amide moiety improves drug-like features. Our study led to the discovery of potent and orally bioavailable BET inhibitor 1q (SJ1461) as a promising candidate for further development.
引用
收藏
页数:8
相关论文
共 50 条
  • [1] Structure-guided design of potent, selective, and orally bioavailable Tankyrase inhibitors
    Bregman, Howard
    DiMauro, Erin
    Chakka, Nagasree
    Guzman-Perez, Angel
    Hua, Zihao
    Huang, Hongbing
    Martin, Matthew
    Buchanan, John
    Gunaydin, Hakan
    Huang, Xin
    Huang, Liyue
    Wilson, Cindy
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 250
  • [2] Structure-guided discovery of a novel, potent, and orally bioavailable 3,5-dimethylisoxazole aryl-benzimidazole BET bromodomain inhibitor
    Sperandio, David
    Aktoudianakis, Vangelis
    Babaoglu, Kerim
    Chen, Xiaowu
    Elbel, Kristyna
    Chin, Gregory
    Corkey, Britton
    Du, Jinfa
    Jiang, Bob
    Kobayashi, Tetsuya
    Mackman, Richard
    Martinez, Ruben
    Yang, Hai
    Zablocki, Jeff
    Kusam, Saritha
    Jordan, Kim
    Webb, Heather
    Bates, Jamie G.
    Lad, Latesh
    Mish, Michael
    Niedziela-Majka, Anita
    Metobo, Sammy
    Sapre, Annapurna
    Hung, Magdeleine
    Jin, Debi
    Fung, Wanchi
    Kan, Elaine
    Eisenberg, Gene
    Larson, Nate
    Newby, Zachary E. R.
    Lansdon, Eric
    Tay, Chin
    Neve, Richard M.
    Shevick, Sophia L.
    Breckenridge, David G.
    [J]. BIOORGANIC & MEDICINAL CHEMISTRY, 2019, 27 (03) : 457 - 469
  • [3] Structure-Guided Discovery of Novel, Potent, and Orally Bioavailable Inhibitors of Lipoprotein-Associated Phospholipase A2
    Liu, Qiufeng
    Huang, Fubao
    Yuan, Xiaojing
    Wang, Kai
    Zou, Yi
    Shen, Jianhua
    Xu, Yechun
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2017, 60 (24) : 10231 - 10244
  • [4] Structure-Guided Design of Potent Diazobenzene Inhibitors for the BET Bromodomains
    Zhang, Guangtao
    Plotnikov, Alexander N.
    Rusinova, Elena
    Shen, Tong
    Morohashi, Keita
    Joshua, Jennifer
    Zeng, Lei
    Mujtaba, Shiraz
    Ohlmeyer, Michael
    Zhou, Ming-Ming
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2013, 56 (22) : 9251 - 9264
  • [5] Discovery of Potent, Orally Bioavailable Inhibitors of Human Cytomegalovirus
    Fader, Lee
    Brault, Martine
    Desjardins, Jessica
    Dansereau, Nathalie
    Lamorte, Louie
    Tremblay, Sonia
    Bilodeau, Francois
    Bordeleau, Josee
    Duplessis, Martin
    Gorys, Vida
    Gillard, James
    Gleason, James L.
    James, Clint
    Joly, Marc-Andre
    Kuhn, Cyrille
    Llinas-Brunet, Montse
    Luo, Laibin
    Morency, Louis
    Morin, Sebastien
    Parisien, Mathieu
    Poirier, Maude
    Thibeault, Carl
    Thao Trinh
    Sturino, Claudio
    Srivastava, Sanjay
    Yoakim, Christiane
    Franti, Michael
    [J]. ACS MEDICINAL CHEMISTRY LETTERS, 2016, 7 (05): : 525 - 530
  • [6] Discovery of potent and orally bioavailable macrocyclic FXIa inhibitors
    Yang, Wu
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 254
  • [7] Structure-Guided Discovery of Potent and Selective DYRK1A Inhibitors
    Weber, Csaba
    Sipos, Melinda
    Paczal, Attila
    Balint, Balazs
    Kun, Vilibald
    Foloppe, Nicolas
    Dokurno, Pawel
    Massey, Andrew J.
    Walmsley, David Lee
    Hubbard, Roderick E.
    Murray, James
    Benwell, Karen
    Edmonds, Thomas
    Demarles, Didier
    Bruno, Alain
    Burbridge, Mike
    Cruzalegui, Francisco
    Kotschy, Andras
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2021, 64 (10) : 6745 - 6764
  • [8] Discovery of a Pyrimidinedione Derivative as a Potent and Orally Bioavailable Axl Inhibitor
    Zhang, Hefeng
    Peng, Xia
    Dai, Yang
    Shao, Jingwei
    Ji, Yinchun
    Sun, Yiming
    Liu, Bo
    Cheng, Xu
    Ai, Jing
    Duan, Wenhu
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2021, 64 (07) : 3956 - 3975
  • [9] Discovery of a Potent and Orally Bioavailable Cyclophilin Inhibitor Derived from the Sanglifehrin Macrocycle
    Mackman, Richard L.
    Steadman, Victoria A.
    Dean, David K.
    Jansa, Petr
    Poullennec, Karine G.
    Appleby, Todd
    Austin, Carol
    Blakemore, Caroline A.
    Cai, Ruby
    Cannizzaro, Carina
    Chin, Gregory
    Chiva, Jean-Yves C.
    Dunbar, Neil A.
    Fliri, Hans
    Highton, Adrian J.
    Hui, Hon
    Ji, Mingzhe
    Jin, Haolun
    Karki, Kapil
    Keats, Andrew J.
    Lazarides, Linos
    Lee, Yu-Jen
    Liclican, Albert
    Mish, Michael
    Murray, Bernard
    Pettit, Simon B.
    Pyun, Peter
    Sangi, Michael
    Santos, Rex
    Sanvoisin, Jonathan
    Schmitz, Uli
    Schrier, Adam
    Siegel, Dustin
    Sperandio, David
    Stepan, George
    Tian, Yang
    Watt, Gregory M.
    Yang, Hai
    Schultz, Brian E.
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2018, 61 (21) : 9473 - 9499
  • [10] Structure-Based Discovery of CF53 as a Potent and Orally Bioavailable Bromodomain and Extra-Terminal (BET) Bromodomain Inhibitor
    Zhao, Yujun
    Zhou, Bing
    Bai, Longchuan
    Liu, Liu
    Yang, Chao-Yie
    Meagher, Jennifer L.
    Stuckey, Jeanne A.
    McEachern, Donna
    Przybranowski, Sally
    Wang, Mi
    Ran, Xu
    Aguilar, Angelo
    Hu, Yang
    Kampf, Jeff W.
    Li, Xiaoqin
    Zhao, Ting
    Li, Siwei
    Wen, Bo
    Sun, Duxin
    Wang, Shaomeng
    [J]. JOURNAL OF MEDICINAL CHEMISTRY, 2018, 61 (14) : 6110 - 6120