RADCURE: An open-source head and neck cancer CT dataset for clinical radiation therapy insights

被引:2
|
作者
Welch, Mattea L. [1 ,2 ]
Kim, Sejin [1 ,2 ,3 ]
Hope, Andrew J. [4 ,5 ]
Huang, Shao Hui [4 ,5 ]
Lu, Zhibin [1 ]
Marsilla, Joseph [1 ,3 ]
Kazmierski, Michal [1 ,3 ]
Rey-McIntyre, Katrina [4 ]
Patel, Tirth [2 ,4 ,6 ]
O'Sullivan, Brian [4 ,5 ]
Waldron, John [4 ,5 ]
Bratman, Scott [3 ]
Haibe-Kains, Benjamin [1 ,2 ,3 ,6 ]
Tadic, Tony [2 ,4 ,5 ]
机构
[1] Princess Margaret Canc Ctr, Toronto, ON, Canada
[2] Canc Digital Intelligence Program, Toronto, ON, Canada
[3] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[4] Princess Margaret Canc Ctr, Radiat Med Program, Toronto, ON, Canada
[5] Univ Toronto, Dept Radiat Oncol, Toronto, ON, Canada
[6] Univ Hlth Network, TECHNA Inst, Toronto, ON, Canada
关键词
computed tomography; head and neck cancer; imaging dataset; radiation therapy; RADIOMICS; PREDICTION; IMAGES; PET;
D O I
10.1002/mp.16972
中图分类号
R8 [特种医学]; R445 [影像诊断学];
学科分类号
1002 ; 100207 ; 1009 ;
摘要
PurposeThis manuscript presents RADCURE, one of the most extensive head and neck cancer (HNC) imaging datasets accessible to the public. Initially collected for clinical radiation therapy (RT) treatment planning, this dataset has been retrospectively reconstructed for use in imaging research.Acquisition and Validation MethodsRADCURE encompasses data from 3346 patients, featuring computed tomography (CT) RT simulation images with corresponding target and organ-at-risk contours. These CT scans were collected using systems from three different manufacturers. Standard clinical imaging protocols were followed, and contours were manually generated and reviewed at weekly RT quality assurance rounds. RADCURE imaging and structure set data was extracted from our institution's radiation treatment planning and oncology information systems using a custom-built data mining and processing system. Furthermore, images were linked to our clinical anthology of outcomes data for each patient and includes demographic, clinical and treatment information based on the 7th edition TNM staging system (Tumor-Node-Metastasis Classification System of Malignant Tumors). The median patient age is 63, with the final dataset including 80% males. Half of the cohort is diagnosed with oropharyngeal cancer, while laryngeal, nasopharyngeal, and hypopharyngeal cancers account for 25%, 12%, and 5% of cases, respectively. The median duration of follow-up is five years, with 60% of the cohort surviving until the last follow-up point.Data Format and Usage NotesThe dataset provides images and contours in DICOM CT and RT-STRUCT formats, respectively. We have standardized the nomenclature for individual contours-such as the gross primary tumor, gross nodal volumes, and 19 organs-at-risk-to enhance the RT-STRUCT files' utility. Accompanying demographic, clinical, and treatment data are supplied in a comma-separated values (CSV) file format. This comprehensive dataset is publicly accessible via The Cancer Imaging Archive.Potential ApplicationsRADCURE's amalgamation of imaging, clinical, demographic, and treatment data renders it an invaluable resource for a broad spectrum of radiomics image analysis research endeavors. Researchers can utilize this dataset to advance routine clinical procedures using machine learning or artificial intelligence, to identify new non-invasive biomarkers, or to forge prognostic models.
引用
收藏
页码:3101 / 3109
页数:9
相关论文
共 50 条
  • [1] RADCURE: A LARGE OPEN SOURCE HEAD AND NECK RADIATION THERAPY DATASET FOR DATA SCIENCE
    Hope, Andrew
    Welch, Mattea
    Bratman, Scott
    Waldron, John
    O'Sullivan, Brian
    Patel, Tirth
    Rey-McIntyre, Katrina
    Kim, Sejin
    Marsilla, Joseph
    Lu, Zhibin
    Kazmierski, Michal
    Huang, Shao Hui
    Haibe-Kains, Benjamin
    Tadic, Tony
    RADIOTHERAPY AND ONCOLOGY, 2022, 174 : S10 - S10
  • [2] An open-source foundation for head and neck radiomics
    Scott, Katy L.
    Kim, Sejin
    Joseph, Jermiah J.
    Boccalon, Matthew
    Welch, Mattea
    Yousafzai, Umar
    Smith, Ian
    McIntosh, Chris
    Rey-McIntyre, Katrina
    Huang, Shao Hui
    Patel, Tirth
    Tadic, Tony
    O'Sullivan, Brian
    Bratman, Scott V.
    Hope, Andrew J.
    Haibe-Kains, Benjamin
    RADIOTHERAPY AND ONCOLOGY, 2024, 192 : S22 - S25
  • [3] The Remove-the-Mask Open-Source head and neck Surface-Guided radiation therapy system
    Ben Bouchta, Youssef
    Gardner, Mark
    Sengupta, Chandrima
    Johnson, Julia
    Keall, Paul
    PHYSICS & IMAGING IN RADIATION ONCOLOGY, 2024, 29
  • [4] CLINICAL APPLICATION OF CT FOR RADIATION-THERAPY OF HEAD AND NECK
    SADAMOTO, K
    JOURNAL OF COMPUTER ASSISTED TOMOGRAPHY, 1977, 1 (03) : 371 - 371
  • [5] Development of a radiation therapy open-source platform
    Gruenwald, Oxana
    Ruhlmann, Juergen
    Buzug, Thorsten M.
    2005 27TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-7, 2005, : 1887 - 1892
  • [6] Prediction in Clinical Response to Radiation Therapy for Head and Neck Cancer
    Huang, Z.
    Mayr, N.
    Lo, S.
    Winkler, S.
    Yuh, K.
    Lok, C.
    Liu, T.
    Stephenson, S.
    McLawhorn, R.
    Rasmussen, K.
    Rice, J.
    Yuh, W.
    MEDICAL PHYSICS, 2013, 40 (06)
  • [7] Radiation therapy in head and neck cancer
    Alfouzan, Afnan F.
    SAUDI MEDICAL JOURNAL, 2021, 42 (03) : 247 - 254
  • [8] Radiation therapy in head and neck cancer
    Tribius, S.
    Petersen, C.
    Knecht, R.
    Ihloff, A. S.
    HNO, 2010, 58 (12) : 1168 - 1173
  • [9] Machine Learning Applications in Head and Neck Radiation Oncology: Lessons From Open-Source Radiomics Challenges
    Elhalawani, Hesham
    Lin, Timothy A.
    Volpe, Stefania
    Mohamed, Abdallah S. R.
    White, Aubrey L.
    Zafereo, James
    Wong, Andrew J.
    Berends, Joel E.
    AboHashem, Shady
    Williams, Bowman
    Aymard, Jeremy M.
    Kanwar, Aasheesh
    Perni, Subha
    Rock, Crosby D.
    Cooksey, Luke
    Campbell, Shauna
    Yang, Pei
    Khahn Nguyen
    Ger, Rachel B.
    Cardenas, Carlos E.
    Fave, Xenia J.
    Sansone, Carlo
    Piantadosi, Gabriele
    Marrone, Stefano
    Liu, Rongjie
    Huang, Chao
    Yu, Kaixian
    Li, Tengfei
    Yu, Yang
    Zhang, Youyi
    Zhu, Hongtu
    Morris, Jeffrey S.
    Baladandayuthapani, Veerabhadran
    Shumway, John W.
    Ghosh, Alakonanda
    Poehlmann, Andrei
    Phoulady, Hady A.
    Goyal, Vibhas
    Canahuate, Guadalupe
    Marai, G. Elisabeta
    Vock, David
    Lai, Stephen Y.
    Mackin, Dennis S.
    Court, Laurence E.
    Freymann, John
    Farahani, Keyvan
    Kaplathy-Cramer, Jayashree
    Fuller, Clifton D.
    FRONTIERS IN ONCOLOGY, 2018, 8
  • [10] Deep learning tools for the cancer clinic: an open-source framework with head and neck contour validation
    Asbach, John C.
    Singh, Anurag K.
    Matott, L. Shawn
    Le, Anh H.
    RADIATION ONCOLOGY, 2022, 17 (01)