SINGLE-CELL GENE EXPRESSION AND CHROMATIN ACCESSIBILITY PROFILING REVEALS PROFOUND CELLULAR AND EPIGENETIC PLASTICITY OF INTESTINAL POUCHES FROM ULCERATIVE COLITIS PATIENTS

被引：0
|
作者：
Zhao, Yu
Zhou, Ran
Xie, Bingqing
Liu, Cambrian Y.
Cham, Candace M.
Koval, Jason
Kalski, Martin
Rubin, David T.
Huang, Jun
Sogin, Mitch
Weber, Christopher
Fiebig, Aretha
Crosson, Sean
Dalal, Sushila
Chang, Eugene B.
Basu, Anindita
Pott, Sebastian
机构：
来源：
GASTROENTEROLOGY | 2023年 / 164卷 / 06期
关键词：
D O I：
暂无
中图分类号：
R57 [消化系及腹部疾病];
学科分类号：
摘要：
Sa1797
引用
收藏
页码：S436 / S436
页数：1
相关论文
共 50 条
  • [1] Multiomic analysis reveals cellular, transcriptomic and epigenetic changes in intestinal pouches of ulcerative colitis patients
    Zhao, Yu
    Zhou, Ran
    Xie, Bingqing
    Liu, Cambrian Y.
    Kalski, Martin
    Cham, Candace M.
    Jiang, Zhiwei
    Koval, Jason
    Weber, Christopher R.
    Rubin, David T.
    Sogin, Mitch
    Crosson, Sean
    Chen, Mengjie
    Huang, Jun
    Fiebig, Aretha
    Dalal, Sushila
    Chang, Eugene B.
    Basu, Anindita
    Pott, Sebastian
    NATURE COMMUNICATIONS, 2025, 16 (01)
  • [2] Single-cell chromatin accessibility landscape profiling reveals the diversity of epigenetic regulation in the rat nervous system
    Ma, Peiyao
    Duan, Shanshan
    Ma, Wen
    Deng, Qiuting
    Yu, Yeya
    Gao, Peng
    Yuan, Yue
    Liu, Chuanyu
    SCIENTIFIC DATA, 2025, 12 (01)
  • [3] Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
    Cusanovich, Darren A.
    Daza, Riza
    Adey, Andrew
    Pliner, Hannah A.
    Christiansen, Lena
    Gunderson, Kevin L.
    Steemers, Frank J.
    Trapnell, Cole
    Shendure, Jay
    SCIENCE, 2015, 348 (6237) : 910 - 914
  • [4] Single-cell multimodal profiling reveals cellular epigenetic heterogeneity
    Lih Feng Cheow
    Elise T Courtois
    Yuliana Tan
    Ramya Viswanathan
    Qiaorui Xing
    Rui Zhen Tan
    Daniel S W Tan
    Paul Robson
    Yuin-Han Loh
    Stephen R Quake
    William F Burkholder
    Nature Methods, 2016, 13 : 833 - 836
  • [5] Single-cell multimodal profiling reveals cellular epigenetic heterogeneity
    Cheow, Lih Feng
    Courtois, Elise T.
    Tan, Yuliana
    Viswanathan, Ramya
    Xing, Qiaorui
    Tan, Rui Zhen
    Tan, Daniel S. W.
    Robson, Paul
    Loh, Yuin-Han
    Quake, Stephen R.
    Burkholder, William F.
    NATURE METHODS, 2016, 13 (10) : 833 - +
  • [6] Joint profiling of gene expression and chromatin accessibility during amphioxus development at single-cell resolution
    Ma, Pengcheng
    Liu, Xingyan
    Xu, Zaoxu
    Liu, Huimin
    Ding, Xiangning
    Huang, Zhen
    Shi, Chenggang
    Liang, Langchao
    Xu, Luohao
    Li, Xiaolu
    Li, Guimei
    He, Yuqi
    Ding, Zhaoli
    Chai, Chaochao
    Wang, Haoyu
    Qiu, Jiaying
    Zhu, Jiacheng
    Wang, Xiaoling
    Ding, Peiwen
    Zhou, Si
    Yuan, Yuting
    Wu, Wendi
    Wan, Cen
    Yan, Yanan
    Zhou, Yitao
    Zhou, Qi-Jun
    Wang, Guo-Dong
    Zhang, Qiujin
    Xu, Xun
    Li, Guang
    Zhang, Shihua
    Mao, Bingyu
    Chen, Dongsheng
    CELL REPORTS, 2022, 39 (12):
  • [7] Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging
    Cheung, Peggie
    Vallania, Francesco
    Warsinske, Hayley C.
    Donato, Michele
    Schaffert, Steven
    Chang, Sarah E.
    Dvorak, Mai
    Dekker, Cornelia L.
    Davis, Mark M.
    Utz, Paul J.
    Khatri, Purvesh
    Kuo, Alex J.
    CELL, 2018, 173 (06) : 1385 - +
  • [8] Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin
    Martina Tedesco
    Francesca Giannese
    Dejan Lazarević
    Valentina Giansanti
    Dalia Rosano
    Silvia Monzani
    Irene Catalano
    Elena Grassi
    Eugenia R. Zanella
    Oronza A. Botrugno
    Leonardo Morelli
    Paola Panina Bordignon
    Giulio Caravagna
    Andrea Bertotti
    Gianvito Martino
    Luca Aldrighetti
    Sebastiano Pasqualato
    Livio Trusolino
    Davide Cittaro
    Giovanni Tonon
    Nature Biotechnology, 2022, 40 : 235 - 244
  • [9] Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin
    Tedesco, Martina
    Giannese, Francesca
    Lazarevic, Dejan
    Giansanti, Valentina
    Rosano, Dalia
    Monzanis, Silvia
    Catalano, Irene
    Grassi, Elena
    Zanella, Eugenia R.
    Botrugno, Oronza A.
    Morelli, Leonardo
    Bordignon, Paola Panina
    Caravagna, Giulio
    Bertotti, Andrea
    Martino, Gianvito
    Aldrighetti, Luca
    Pasqualato, Sebastiano
    Trusolino, Livio
    Cittaro, Davide
    Tonon, Giovanni
    NATURE BIOTECHNOLOGY, 2022, 40 (02) : 235 - +
  • [10] Single-cell chromatin accessibility profiling reveals a self-renewing muscle satellite cell state
    Okafor, Arinze E.
    Lin, Xin
    Situ, Chenghao
    Wei, Xiaolin
    Xiang, Yu
    Wei, Xiuqing
    Wu, Zhenguo
    Diao, Yarui
    JOURNAL OF CELL BIOLOGY, 2023, 222 (08):
12345