The many faces of ribosome translocation along the mRNA: reading frame maintenance, ribosome frameshifting and translational bypassing

被引:6
|
作者
Poulis, Panagiotis [1 ]
Peske, Frank [1 ]
Rodnina, Marina V. [1 ]
机构
[1] Max Planck Inst Multidisciplinary Sci, Dept Phys Biochem, Fassberg 11, D-37077 Gottingen, Germany
关键词
mRNA; recoding; ribosome; translation fidelity; translocation; tRNA; ELONGATION-FACTOR-G; SITE TRANSFER-RNA; EF-G; L1; STALK; CONFORMATIONAL PLASTICITY; INTERMEDIATE STATES; BACTERIAL RIBOSOME; SINGLE-MOLECULE; GTP HYDROLYSIS; HUNGRY CODONS;
D O I
10.1515/hsz-2023-0142
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
In each round of translation elongation, the ribosome translocates along the mRNA by precisely one codon. Translocation is promoted by elongation factor G (EF-G) in bacteria (eEF2 in eukaryotes) and entails a number of precisely-timed large-scale structural rearrangements. As a rule, the movements of the ribosome, tRNAs, mRNA and EF-G are orchestrated to maintain the exact codon-wise step size. However, signals in the mRNA, as well as environmental cues, can change the timing and dynamics of the key rearrangements leading to recoding of the mRNA into production of trans-frame peptides from the same mRNA. In this review, we discuss recent advances on the mechanics of translocation and reading frame maintenance. Furthermore, we describe the mechanisms and biological relevance of non-canonical translocation pathways, such as hungry and programmed frameshifting and translational bypassing, and their link to disease and infection.
引用
收藏
页码:755 / 767
页数:13
相关论文
共 16 条
  • [1] mRNA reading frame maintenance during eukaryotic ribosome translocation
    Milicevic, Nemanja
    Jenner, Lasse
    Myasnikov, Alexander
    Yusupov, Marat
    Yusupova, Gulnara
    NATURE, 2024, 625 (7994) : 393 - 400
  • [2] mRNA reading frame maintenance during eukaryotic ribosome translocation
    Nemanja Milicevic
    Lasse Jenner
    Alexander Myasnikov
    Marat Yusupov
    Gulnara Yusupova
    Nature, 2024, 625 : 393 - 400
  • [3] Maintenance of the correct open reading frame by the ribosome
    Hansen, TM
    Baranov, PV
    Ivanov, IP
    Gesteland, RF
    Atkins, JF
    EMBO REPORTS, 2003, 4 (05) : 499 - 504
  • [4] Altered tRNA dynamics during translocation on slippery mRNA as determinant of spontaneous ribosome frameshifting
    Poulis, Panagiotis
    Patel, Anoshi
    Rodnina, Marina V.
    Adio, Sarah
    NATURE COMMUNICATIONS, 2022, 13 (01)
  • [5] Altered tRNA dynamics during translocation on slippery mRNA as determinant of spontaneous ribosome frameshifting
    Panagiotis Poulis
    Anoshi Patel
    Marina V. Rodnina
    Sarah Adio
    Nature Communications, 13
  • [6] Structural aspects of messenger RNA reading frame maintenance by the ribosome
    Jenner, Lasse B.
    Demeshkina, Natalia
    Yusupova, Gulnara
    Yusupov, Marat
    NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2010, 17 (05) : 555 - U48
  • [7] Structural aspects of messenger RNA reading frame maintenance by the ribosome
    Lasse B Jenner
    Natalia Demeshkina
    Gulnara Yusupova
    Marat Yusupov
    Nature Structural & Molecular Biology, 2010, 17 : 555 - 560
  • [8] Structural determinants of an internal ribosome entry site that direct translational reading frame selection
    Ren, Qian
    Au, Hilda H. T.
    Wang, Qing S.
    Lee, Seonghoon
    Jan, Eric
    NUCLEIC ACIDS RESEARCH, 2014, 42 (14) : 9366 - 9382
  • [9] Isolation of Ribosome Bound Nascent Polypeptides in vitro to Identify Translational Pause Sites Along mRNA
    Jha, Sujata S.
    Komar, Anton A.
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2012, (65):
  • [10] A stable hairpin preceded by a short open reading frame promotes nonlinear ribosome migration on a synthetic mRNA leader
    Hemmings-Mieszczak, M
    Hohn, T
    RNA, 1999, 5 (09) : 1149 - 1157