Validation of Fuscoporia (Hymenochaetales, Basidiomycota) ITS sequences and five new species based on multi-marker phylogenetic and morphological analyses
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作者:
Cho, Yoonhee
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Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Seoul Natl Univ, Inst Microbiol, Seoul, South KoreaSeoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Cho, Yoonhee
[1
,2
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Kim, Dohye
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Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Seoul Natl Univ, Inst Microbiol, Seoul, South KoreaSeoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Kim, Dohye
[1
,2
]
Lee, Yoongil
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Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Seoul Natl Univ, Inst Microbiol, Seoul, South KoreaSeoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Lee, Yoongil
[1
,2
]
Jeong, Juhwan
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Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Seoul Natl Univ, Inst Microbiol, Seoul, South KoreaSeoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Jeong, Juhwan
[1
,2
]
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Hussain, Shahid
[3
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Lim, Young Woon
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Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Seoul Natl Univ, Inst Microbiol, Seoul, South KoreaSeoul Natl Univ, Sch Biol Sci, Seoul, South Korea
Lim, Young Woon
[1
,2
]
机构:
[1] Seoul Natl Univ, Sch Biol Sci, Seoul, South Korea
[2] Seoul Natl Univ, Inst Microbiol, Seoul, South Korea
Although there is a continuous increase in available molecular data, not all sequence identities in public databases are always properly verified and managed. Here, the sequences available in GenBank for Fuscoporia (Hymenochaetales) were validated. Many morphological characters of Fuscoporia overlap among the species, emphasizing the role of molecular identification for accuracy. The identities of 658 Fuscoporia GenBank internal transcribed spacer (ITS) sequences were assessed using ITS phylogeny, revealing 109 (16.6%) misidentified and 196 (29.8%) unspecified sequences. They were validated and re-identified based on the research articles they were published in and, if unpublished, based on sequences from the type, type locality-derived sequences, or otherwise reliable sequences. To enhance the resolution of species delimitation, a phylogenetic assessment of a multi-marker dataset (ITS + nrLSU + rpb2 + tef1) was conducted. The multi-marker phylogeny resolved five of the twelve species complexes found in the ITS phylogeny and uncovered five new Fuscoporia species: F. dolichoseta, F. gilvoides, F. koreana, F. reticulata, and F. semicephala. The validated ITS sequences in this study may prevent further accumulation of misidentified sequences in public databases and contribute to a more accurate taxonomic evaluation of Fuscoporia species.
机构:
Tongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
Chongqing Jiaotong Univ, Coll Architecture & Urban Planning, Chongqing 400074, Peoples R China
Tongji Univ, Key Lab Ecol & Energy Saving Study Dense Habitat, Minist Educ, Shanghai 200092, Peoples R ChinaTongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
Chen, Qian
Luo, Hua-dong
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Nat Reserve Ctr Chongqing Yongchuan, Chongqing 402160, Peoples R ChinaTongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
Luo, Hua-dong
Cheng, Na
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Chongqing City Integrated Transportat Hub Grp Co L, Chongqing 401121, Peoples R ChinaTongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
Cheng, Na
Zhang, De-shun
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机构:
Tongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
Tongji Univ, Key Lab Ecol & Energy Saving Study Dense Habitat, Minist Educ, Shanghai 200092, Peoples R ChinaTongji Univ, Coll Architecture & Urban Planning, Shanghai 200092, Peoples R China
机构:
Southwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Dai, Yunfei
Yuan, Qi
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Southwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Yuan, Qi
Yang, Xin
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Southwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Yang, Xin
Liu, Rui
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机构:
Kunming Municipal Capital Construction Arch, Kunming 650032, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Liu, Rui
Liu, Defu
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机构:
Zhaotong Univ, Yunnan Key Lab Gastrodia & Fungal Symbiot Biol, Zhaotong 657000, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Liu, Defu
Yuan, Haisheng
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Chinese Acad Sci, Inst Appl Ecol, Key Lab Forest Ecol & Management, Shenyang 110016, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Yuan, Haisheng
Zhao, Changlin
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Southwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China
Zhaotong Univ, Yunnan Key Lab Gastrodia & Fungal Symbiot Biol, Zhaotong 657000, Peoples R ChinaSouthwest Forestry Univ, Coll Forestry, Kunming 650224, Peoples R China