On the reliability of recombinase polymerase amplification - lateral flow assay using ITS rRNA gene primers and probe as a new detection method of the golden potato cyst nematode, Globodera rostochiensis

被引:2
|
作者
Subbotin, Sergei A. [1 ]
机构
[1] Calif Dept Food & Agr, Plant Pest Diagnost Ctr, 3294 Meadowview Rd, Sacramento, CA 95832 USA
来源
RUSSIAN JOURNAL OF NEMATOLOGY | 2023年 / 31卷 / 02期
关键词
cross-reactions; Globodera ellingtonae; Globodera pallida; molecular diagnostics; specific primers; specificity assay; CHAIN-REACTION; IDENTIFICATION; PHYLOGEOGRAPHY; PHYLOGENY; PALLIDA;
D O I
10.24412/0869-6918-2023-2-115-120
中图分类号
Q95 [动物学];
学科分类号
071002 ;
摘要
. Recombinase polymerase amplification (RPA) is an isothermal in vitro nucleic acid amplification technique, which has been adopted as a novel molecular technology for simple, rapid, reliable, and low-resource diagnostics of nematodes and other damaging organisms. Recently, RPA integrated with lateral flow assay (LFA) using the ITS rRNA gene primers and probe was proposed by Wang et al. (2022) as a new detection method of Globodera rostochiensis. The reliability of any diagnostic method should be validated on a broad range of populations of different species from different geographical locations as well as on related taxa to avoid erroneous identification with false positive results. A total of 24 isolates of 13 cyst nematode species were used to validate the analytical specificity of the method mentioned above. The results of these tests showed that the ITS rRNA gene primers and probe did not give specific RPA-LFA detection for the golden potato cyst nematode and gave positive reactions not only with G. rostochiensis , but also with other Globodera parasitising solanaceous plants, G. artemisiae , and representatives of the genus Punctodera parasitising grasses.
引用
收藏
页码:115 / 120
页数:6
相关论文
共 40 条
  • [1] Rapid Diagnosis and Visual Detection of Potato Cyst Nematode (Globodera rostochiensis) Using Recombinase Polymerase Amplification Combination with Lateral Flow Assay Method (RPA-LFA)
    Wang, Xu
    Lei, Rong
    Peng, Huan
    Jiang, Ru
    Shao, Hudie
    Ge, Jianjun
    Peng, Deliang
    AGRONOMY-BASEL, 2022, 12 (10):
  • [2] Rapid and sensitive detection of potato cyst nematode Globodera rostochiensis by loop-mediated isothermal amplification assay
    Ahuja, Amit
    Joshi, Vijay
    Singh, Gagandeep
    Kundu, Artha
    Bhat, Chaitra G.
    Kumar, Satya
    Rao, Uma
    Somvanshi, Vishal Singh
    3 BIOTECH, 2021, 11 (06)
  • [3] Rapid and sensitive detection of potato cyst nematode Globodera rostochiensis by loop-mediated isothermal amplification assay
    Amit Ahuja
    Vijay Joshi
    Gagandeep Singh
    Artha Kundu
    Chaitra G. Bhat
    Satya Kumar
    Uma Rao
    Vishal Singh Somvanshi
    3 Biotech, 2021, 11
  • [4] Recombinase polymerase amplification combined with lateral flow assay for detection of potato spindle tuber viroid
    Ivanov, A. V.
    Safenkova, I. V.
    Zherdev, A. V.
    Dzantiev, B. B.
    FEBS OPEN BIO, 2021, 11 : 268 - 268
  • [5] Rapid Detection of the Strawberry Foliar Nematode Aphelenchoides fragariae Using Recombinase Polymerase Amplification Assay with Lateral Flow Dipsticks
    Subbotin, Sergei A.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 25 (02)
  • [6] New Fpg probe chemistry for direct detection of recombinase polymerase amplification on lateral flow strips
    Powell, Michael L.
    Bowler, Frank R.
    Martinez, Aurore J.
    Greenwood, Catherine J.
    Armes, Niall
    Piepenburg, Olaf
    ANALYTICAL BIOCHEMISTRY, 2018, 543 : 108 - 115
  • [7] Rapid detection of Pratylenchus coffeae using recombinase polymerase amplification assay with lateral flow dipsticks
    Wu, Caiyun
    Xu, Xueliang
    Fan, Linjuan
    Yao, Jian
    Liu, Zirong
    Zhang, Fan
    Yao, Yingjuan
    PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 2025, 136
  • [8] Rapid and Visual Detection of Meloidogyne hapla Using Recombinase Polymerase Amplification Combined with a Lateral Flow Dipstick Assay
    Song, Zhiqiang
    Yang, Xiai
    Zhang, Xiaowei
    Luan, Mingbao
    Guo, Bing
    Liu, Chunjie
    Pan, Jiangpeng
    Mei, Shiyong
    PLANT DISEASE, 2021, 105 (09) : 2697 - 2703
  • [9] Rapid and simple detection of Phytophthora cactorum in strawberry using a coupled recombinase polymerase amplification–lateral flow strip assay
    Xinyu Lu
    Heng Xu
    Wen Song
    Zitong Yang
    Jia Yu
    Yuee Tian
    Min Jiang
    Danyu Shen
    Daolong Dou
    Phytopathology Research, 3
  • [10] Detection of Pan-Dermatophytes and Trichophyton rubrum Using Recombinase Polymerase Amplification-Lateral Flow Dipstick Assay
    Wang, Qian
    Huang, Xin
    Yan, Qiuhong
    Chen, Ruikang
    Shao, Lifang
    Li, Ruoyu
    Song, Yinggai
    Yuan, Xiaoying
    MYCOPATHOLOGIA, 2025, 190 (01)