Molecular Biomarker Identification Using a Network-Based Bioinformatics Approach That Links COVID-19 With Smoking

被引:0
|
作者
Rahman, Md Anisur [1 ]
Al Amin, Md [2 ]
Yeasmin, Most Nilufa [3 ]
Islam, Md Zahidul [3 ,4 ]
机构
[1] Islamic Univ, Dept Pharm, Kushtia, Bangladesh
[2] Prime Univ, Dept Comp Sci & Engn, Dhaka, Bangladesh
[3] Islamic Univ, Dept Informat & Commun Technol, Kushtia, Bangladesh
[4] Islamic Univ, Dept Informat & Commun Technol, Kushtia 7003, Bangladesh
来源
关键词
Smoking; COVID-19; bio-informatics; GSEA; gene ontology; BLOOD-COAGULATION; CIGARETTE-SMOKING; LUNG-CANCER; DATABASE; IMMUNITY; SERUM; MILD; RISK;
D O I
10.1177/11779322231186481
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The COVID-19 coronavirus, which primarily affects the lungs, is the source of the disease known as SARS-CoV-2. According to "Smoking and COVID-19: a scoping review," about 32% of smokers had a severe case of COVID-19 pneumonia at their admission time and 15% of non-smokers had this case of COVID-19 pneumonia. We were able to determine which genes were expressed differently in each group by comparing the expression of gene transcriptomic datasets of COVID-19 patients, smokers, and healthy controls. In all, 37 dysregulated genes are common in COVID-19 patients and smokers, according to our analysis. We have applied all important methods namely protein-protein interaction, hub-protein interaction, drug-protein interaction, tf-gene interaction, and gene-MiRNA interaction of bioinformatics to analyze to understand deeply the connection between both smoking and COVID-19 severity. We have also analyzed Pathways and Gene Ontology where 5 significant signaling pathways were validated with previous literature. Also, we verified 7 hub-proteins, and finally, we validated a total of 7 drugs with the previous study.
引用
收藏
页数:15
相关论文
共 50 条
  • [1] Network-based transcriptomic analysis identifies the genetic effect of COVID-19 to chronic kidney disease patients: A bioinformatics approach
    Auwul, Md Rabiul
    Zhang, Chongqi
    Rahman, Md Rezanur
    Shahjaman, Md
    Alyami, Salem A.
    Moni, Mohammad Ali
    SAUDI JOURNAL OF BIOLOGICAL SCIENCES, 2021, 28 (10) : 5647 - 5656
  • [2] Identification of Comorbidities, Genomic Associations, and Molecular Mechanisms for COVID-19 Using Bioinformatics Approaches
    Omit, Shudeb Babu Sen
    Akhter, Salma
    Rana, Humayan Kabir
    Rana, A. R. M. Mahamudul Hasan
    Podder, Nitun Kumar
    Rakib, Mahmudul Islam
    Nobi, Ashadun
    BIOMED RESEARCH INTERNATIONAL, 2023, 2023
  • [3] Bioinformatics Identification of Green Tea Anticancer Properties: a Network-Based Approach
    Zamanian-Azodi, Mona
    Rezaei-Tavirani, Mostafa
    Esmaeili, Somayeh
    Tavirani, Majid Rezaei
    RESEARCH JOURNAL OF PHARMACOGNOSY, 2021, 8 (02) : 17 - 25
  • [4] A comprehensive identification of potential molecular targets and small drugs candidate for melanoma cancer using bioinformatics and network-based screening approach
    Khan, Dhrubo Ahmed
    Adhikary, Tonmoy
    Sultana, Mst. Tania
    Toukir, Imran Ahamed
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (14): : 7349 - 7369
  • [5] Identification of biomarkers for hepatocellular carcinoma using network-based bioinformatics methods
    Lingyan Zhang
    Ying Guo
    Bibo Li
    Juan Qu
    Chunbao Zang
    Fang Li
    Ying Wang
    Hua Pang
    Shaolin Li
    Qingjun Liu
    European Journal of Medical Research, 18
  • [6] Identification of biomarkers for hepatocellular carcinoma using network-based bioinformatics methods
    Zhang, Lingyan
    Guo, Ying
    Li, Bibo
    Qu, Juan
    Zang, Chunbao
    Li, Fang
    Wang, Ying
    Pang, Hua
    Li, Shaolin
    Liu, Qingjun
    EUROPEAN JOURNAL OF MEDICAL RESEARCH, 2013, 18
  • [7] Investigating the COVID-19 vaccine discussions on Twitter through a multilayer network-based approach
    Bonifazi, Gianluca
    Breve, Bernardo
    Cirillo, Stefano
    Corradini, Enrico
    Virgili, Luca
    INFORMATION PROCESSING & MANAGEMENT, 2022, 59 (06)
  • [8] Common genetic aspects between COVID-19 and sarcoidosis: A network-based approach using gene expression data
    Mogal, Md Roman
    Sompa, Sagarika Adhikary
    Junayed, Asadullah
    Mahmod, Md Rashel
    Abedin, Md Zainul
    Sikder, Md Asaduzzaman
    BIOCHEMISTRY AND BIOPHYSICS REPORTS, 2022, 29
  • [9] A network-based biomarker approach for molecular investigation and diagnosis of lung cancer
    Yu-Chao Wang
    Bor-Sen Chen
    BMC Medical Genomics, 4
  • [10] A network-based biomarker approach for molecular investigation and diagnosis of lung cancer
    Wang, Yu-Chao
    Chen, Bor-Sen
    BMC MEDICAL GENOMICS, 2011, 4