Hide and Mine in Strings: Hardness, Algorithms, and Experiments

被引:3
|
作者
Bernardini, Giulia [1 ,2 ]
Conte, Alessio [3 ]
Gourdel, Garance [3 ,4 ]
Grossi, Roberto [5 ,6 ]
Loukides, Grigorios [7 ]
Pisanti, Nadia [3 ,6 ]
Pissis, Solon P. [2 ,8 ]
Punzi, Giulia [3 ]
Stougie, Leen [2 ,9 ]
Sweering, Michelle [2 ]
机构
[1] Univ Trieste, Trieste I-34127, Italy
[2] CWI, NL-1098 XG Amsterdam, Netherlands
[3] Univ Pisa, I-56126 Pisa, Italy
[4] Inria Rennes, ENS, Ecole Normale Super, Gif Sur Yvette F-91190, France
[5] Univ Pisa, Comp Sci, I-91190 Pisa, Italy
[6] ERABLE Team, F-38330 Montbonnot SaintMartin, France
[7] Kings Coll London, London WCR 2LS, England
[8] Vrije Univ, NL-1081 HV Amsterdam, Netherlands
[9] Vrije Univ, Operat Res, NL-1081 HV Amsterdam, Netherlands
基金
欧盟地平线“2020”;
关键词
Data mining; Bioinformatics; Genomics; DNA; Data integrity; Privacy; Resists; Data privacy; data sanitization; knowledge hiding; frequent pattern mining; string algorithms; MOTIFS; FRAMEWORK; PATTERNS; RULES;
D O I
10.1109/TKDE.2022.3158063
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Data sanitization and frequent pattern mining are two well-studied topics in data mining. Data sanitization is the process of disguising (hiding) confidential information in a given dataset. Typically, this process incurs some utility loss that should be minimized. Frequent pattern mining is the process of obtaining all patterns occurring frequently enough in a given dataset. Our work initiates a study on the fundamental relation between data sanitization and frequent pattern mining in the context of sequential (string) data. Current methods for string sanitization hide confidential patterns. This, however, may lead to spurious patterns that harm the utility of frequent pattern mining. The main computational problem is to minimize this harm. Our contribution here is as follows. First, we present several hardness results, for different variants of this problem, essentially showing that these variants cannot be solved or even be approximated in polynomial time. Second, we propose integer linear programming formulations for these variants and algorithms to solve them, which work in polynomial time under realistic assumptions on the input parameters. We also complement the integer linear programming algorithms with a greedy heuristic. Third, we present an extensive experimental study, using both synthetic and real-world datasets, that demonstrates the effectiveness and efficiency of our methods. Beyond sanitization, the process of missing value replacement may also lead to spurious patterns. Interestingly, our results apply in this context as well. We show that, unlike popular approaches, our methods can fill missing values in genomic sequences, while preserving the accuracy of frequent pattern mining.
引用
收藏
页码:5948 / 5963
页数:16
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