Insight into antimicrobial resistance at a new beef cattle feedlot in western Canada

In North America, beef production relies on the administration of antimicrobials to manage disease. Bovine respiratory disease (BRD) is the most significant disease of beef cattle, and antimicrobial resistance (AMR) to conventional therapies presents an existential risk to animal welfare and food production. While AMR surveillance programs are poised to help facilitate antimicrobial stewardship and decision making at feedlots, monitoring strategies for large numbers of animals at an individual or group level are time consuming and costly. Accordingly, we completed a pilot investigation of feedlot water bowls, which is an understudied interface between cattle and bacteria. By performing cultivation-dependent and cultivation-independent studies, we demonstrate that water bowl-dwelling bacteria can act as sentinel organisms for clinically relevant antimicrobial resistance genes (ARGs) and that cattle have an impact on the microbial communities in the bowls. Moreover, by sampling water at a feedlot site before animal arrival, we detected resistance to two antibiotics: florfenicol and tulathromycin. After just 4 weeks of operation, multidrug-resistant bacteria were routinely found in most water bowls. A comparison of ARGs encoded by five water bowl bacterial isolates along with previously reported source and wastewater metagenomes to those found in BRD pathogens confirmed the utility of using water samples for AMR surveillance.