A Cellular Potts Model of the interplay of synchronization and aggregation

被引:0
|
作者
Una, Rose [1 ]
Glimm, Tilmann [1 ]
机构
[1] Western Washington Univ, Dept Math, Bellingham, WA 98225 USA
来源
PEERJ | 2024年 / 12卷
关键词
Cellular Potts Model; Synchronization; Aggregation; Biological clocks; Mathematical modeling; WAVE-FRONT MODEL; OSCILLATORS; PATTERN; CLOCK;
D O I
10.7717/peerj.16974
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We investigate the behavior of systems of cells with intracellular molecular oscillators ("clocks") where cell-cell adhesion is mediated by differences in clock phase between neighbors. This is motivated by phenomena in developmental biology and in aggregative multicellularity of unicellular organisms. In such systems, aggregation co-occurs with clock synchronization. To account for the effects of spatially extended cells, we use the Cellular Potts Model (CPM), a lattice agent-based model. We find four distinct possible phases: global synchronization, local synchronization, incoherence, and antisynchronization (checkerboard patterns). We characterize these phases via order parameters. In the case of global synchrony, the speed of synchronization depends on the adhesive effects of the clocks. Synchronization happens fastest when cells in opposite phases adhere the strongest ("opposites attract"). When cells of the same clock phase adhere the strongest ("like attracts like"), synchronization is slower. Surprisingly, the slowest synchronization happens in the diffusive mixing case, where cell-cell adhesion is independent of clock phase. We briefly discuss potential applications of the model, such as pattern formation in the auditory sensory epithelium.
引用
收藏
页数:20
相关论文
共 50 条
  • [1] The Cellular Potts Model on Disordered Lattices
    Nemati, Hossein
    de Graaf, Joost
    arXiv,
  • [2] The cellular Potts model on disordered lattices
    Nemati, Hossein
    de Graaf, J.
    SOFT MATTER, 2024, 20 (42) : 8337 - 8352
  • [3] Kinetics of the cellular Potts model revisited
    Nakajima, Akihiko
    Ishihara, Shuji
    NEW JOURNAL OF PHYSICS, 2011, 13
  • [4] Glass transitions in the cellular Potts model
    Chiang, M.
    Marenduzzo, D.
    EPL, 2016, 116 (02)
  • [5] MULTISCALE DEVELOPMENTS OF THE CELLULAR POTTS MODEL
    Scianna, M.
    Preziosi, L.
    MULTISCALE MODELING & SIMULATION, 2012, 10 (02): : 342 - 382
  • [6] Quasistatic rheology of soft cellular systems using the cellular Potts model
    Villemot, Francois
    Durand, Marc
    PHYSICAL REVIEW E, 2021, 104 (05)
  • [7] From energy to cellular forces in the Cellular Potts Model: An algorithmic approach
    Rens, Elisabeth G.
    Edelstein-Keshet, Leah
    PLOS COMPUTATIONAL BIOLOGY, 2019, 15 (12)
  • [8] Parallelizing the Cellular Potts Model on graphics processing units
    Tapia, Jose Juan
    D'Souza, Roshan M.
    COMPUTER PHYSICS COMMUNICATIONS, 2011, 182 (04) : 857 - 865
  • [9] A node-based version of the cellular Potts model
    Scianna, Marco
    Preziosi, Luigi
    COMPUTERS IN BIOLOGY AND MEDICINE, 2016, 76 : 94 - 112
  • [10] Modeling the interplay of oscillatory synchronization and aggregation via cell-cell adhesion
    Glimm, Tilmann
    Gruszka, Daniel
    NONLINEARITY, 2024, 37 (03)