Drug discovery and optimization based on the co-crystal structure of natural product with target

被引:7
|
作者
Chen, Xing [1 ,3 ]
Varghese, Swapna [2 ]
Zhang, Zhaoyan [1 ]
Du, Juncheng [1 ]
Ruan, Banfeng [4 ]
Baell, Jonathan B. [2 ]
Liu, Xinhua [1 ]
机构
[1] Anhui Med Univ, Sch Pharm, Inflammat & Immune Mediated Dis Lab Anhui Prov, Hefei 230032, Peoples R China
[2] Monash Univ, Monash Inst Pharmaceut Sci, Med Chem, Melbourne, Vic 3052, Australia
[3] Anhui Med Univ, Sch Publ Hlth, Key Lab Populat Hlth Life Cycle, Hefei 230032, Peoples R China
[4] Hefei Univ, Key Lab Biofabricat Anhui Higher Educ, Hefei 230601, Peoples R China
基金
中国博士后科学基金;
关键词
BISTRAMIDE-A; CELL-CYCLE; PROTEIN PHOSPHATASE-1; RAPAMYCIN AY-22,989; IN-VITRO; INHIBITION; COMPLEX; PACTAMYCIN; POTENT; GELDANAMYCIN;
D O I
10.1016/j.ejmech.2024.116126
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
Due to their structural diversities and prevalent biological activities, natural products (NPs) are momentous resources for drug discovery. Although NPs have a wide range of biological activities, many exhibit structural complexity that leads to synthetic difficulties, which combines with inefficient biological activity, toxicity, and unfavorable pharmacokinetic characteristics and ultimately imparts poor safety and efficacy outcomes. Progress in crystallization and computational techniques allow crystallography to have a seasonable influences on drug discovery. By co -crystallizing with proteins, therapeutic targets of NPs in specific diseases can be identified. By analyzing the co -crystal information, the structure -activity relationships (SARs) of NPs targeting specific proteins can be grasped. Under the guidance of co -crystal information, directional structural modification and simplification are powerful strategies for overcoming limitations of NPs, improving the success rate of NP -based drug discovery, and obtaining NP -based drugs with high selectivity, low toxicity and favorable pharmacokinetic characteristics. Here, we review the cocrystal information of a selection of NPs, focusing on the SARs of NPs reflected by co -crystal information and the modification and simplification strategies of NPs, and discuss how to apply co -crystal information in the optimization of NP -based lead compound.
引用
收藏
页数:12
相关论文
共 50 条
  • [1] Co-crystal structure-based drug design and synthesis of plinabulin derivatives
    Ma, Mingxu
    Ding, Zhongpeng
    Wang, Shixiao
    Ma, Lingling
    Wang, Yuxi
    Yang, Jinliang
    Li, Wenbao
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 258
  • [2] Natural Product-Based Drug Discovery
    Li, Rongshi
    MEDICINAL RESEARCH REVIEWS, 2016, 36 (01) : 3 - 3
  • [3] Pharmaceutical Co-Crystal of Flufenamic Acid: Synthesis and Characterization of Two Novel Drug-Drug Co-Crystal
    Nechipadappu, Sunil Kumar
    Tekuri, Venkatadri
    Trivedi, Darshak R.
    JOURNAL OF PHARMACEUTICAL SCIENCES, 2017, 106 (05) : 1384 - 1390
  • [4] Crystal structure of a 1:1 co-crystal of the anticancer drug gefitinib with azelaic acid
    George, Christy P.
    Sangtani, Ekta
    Gonnade, Rajesh G.
    ACTA CRYSTALLOGRAPHICA SECTION E-CRYSTALLOGRAPHIC COMMUNICATIONS, 2020, 76 : 884 - +
  • [5] Cheminformatics in Natural Product-Based Drug Discovery
    Chen, Ya
    Kirchmair, Johannes
    MOLECULAR INFORMATICS, 2020, 39 (12)
  • [6] Performance comparison of a co-crystal of carbamazepine with marketed product
    Hickey, Magali B.
    Peterson, Matthew L.
    Scoppettuolo, Lisa A.
    Morrisette, Sherry L.
    Vetter, Anna
    Guzman, Hector
    Remenar, Julius F.
    Zhang, Zhong
    Tawa, Mark D.
    Haley, Sean
    Zaworotko, Michael J.
    Almarsson, Orn
    EUROPEAN JOURNAL OF PHARMACEUTICS AND BIOPHARMACEUTICS, 2007, 67 (01) : 112 - 119
  • [7] A New Co-Crystal of Synthetic Drug Rosiglitazone with Natural Medicine Berberine: Preparation, Crystal Structures, and Dissolution
    Guan, Xiaoshu
    Jiang, Lan
    Cai, Linhong
    Zhang, Li
    Hu, Xiangnan
    MOLECULES, 2020, 25 (18):
  • [8] Novel IKKβ inhibitors discovery based on the co-crystal structure by using binding-conformation-based and ligand-based method
    Huang, Jing-Jie
    Wu, Xiao-Wen
    Jia, Jian-Min
    Guo, Xiao-Ke
    Xue, Xin
    Jiang, Zheng-Yu
    Zhang, Sheng-Lie
    Zhang, Xiao-Jin
    Sun, Hao-Peng
    You, Qi-Dong
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2013, 63 : 269 - 278
  • [9] CO-CRYSTAL STRUCTURE OF MYOD BOUND TO DNA
    MA, PCM
    ROULD, MA
    WEINTRAUB, H
    PABO, CO
    JOURNAL OF CELLULAR BIOCHEMISTRY, 1994, : 489 - 489
  • [10] Biodiversity and natural product drug discovery
    Mahidol, C
    Ruchirawat, S
    Prawat, H
    Pisutjaroenpong, S
    Engprasert, S
    Chumsri, P
    Tengchaisri, T
    Sirisinha, S
    Picha, P
    PURE AND APPLIED CHEMISTRY, 1998, 70 (11) : 2065 - 2072