Conformational exchange divergence along the evolutionary pathway of eosinophil-associated ribonucleases

被引:4
|
作者
Bernard, David N. [1 ,9 ]
Narayanan, Chitra [1 ,2 ]
Hempel, Tim [3 ,4 ]
Bafna, Khushboo [5 ,10 ]
Bhojane, Purva Prashant [5 ,11 ]
Letourneau, Myriam [1 ,9 ]
Howell, Elizabeth E. [5 ]
Agarwal, Pratul K. [6 ,7 ]
Doucet, Nicolas [1 ,8 ]
机构
[1] Univ Quebec, Inst Natl Rech Sci INRS, Ctr Armand Frappier Sante Biotechnol, 531 Blvd Prairies, Laval, PQ H7V 1B7, Canada
[2] New Jersey City Univ, Dept Chem, Jersey City, NJ 07305 USA
[3] Free Univ Berlin, Dept Math & Comp Sci, Arnimallee 12, D-14195 Berlin, Germany
[4] Free Univ Berlin, Dept Phys, Arnimallee 14, D-14195 Berlin, Germany
[5] Univ Tennessee, Dept Biochem & Cellular & Mol Biol, Knoxville, TN 37996 USA
[6] Oklahoma State Univ, Dept Physiol Sci, Stillwater, OK 74078 USA
[7] Oklahoma State Univ, High Performance Comp Ctr, Stillwater, OK 74078 USA
[8] Univ Laval, PROTEO, Quebec Network Res Prot Funct Engn & Applicat, 1045 Ave Med, Quebec City, PQ G1V 0A6, Canada
[9] NMX Res & Solut, 500 Blvd Cartier Ouest,Suite 6000, Laval, PQ H7V 5B7, Canada
[10] Quantum Si, 530 Old Whitfield St, Guilford, CT 06437 USA
[11] Zymeworks, 114 E 4th Ave,Suite 800, Vancouver, BC V5T 1G4, Canada
基金
美国国家科学基金会; 加拿大自然科学与工程研究理事会;
关键词
NEUROTOXIN EDN/RNASE 2; CATIONIC PROTEIN; CHEMICAL-EXCHANGE; HOST-DEFENSE; A SUPERFAMILY; DYNAMICS; RNASE; ANTIBACTERIAL; MECHANISM; SOFTWARE;
D O I
10.1016/j.str.2022.12.011
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The evolutionary role of conformational exchange in the emergence and preservation of function within structural homologs remains elusive. While protein engineering has revealed the importance of flexibility in function, productive modulation of atomic-scale dynamics has only been achieved on a finite number of distinct folds. Allosteric control of unique members within dynamically diverse structural families requires a better appreciation of exchange phenomena. Here, we examined the functional and structural role of conformational exchange within eosinophil-associated ribonucleases. Biological and catalytic activity of various EARs was performed in parallel to mapping their conformational behavior on multiple timescales using NMR and computational analyses. Despite functional conservation and conformational seclusion to a specific domain, we show that EARs can display similar or distinct motional profiles, implying divergence rather than conservation of flexibility. Comparing progressively more distant enzymes should unravel how this subfamily has evolved new functions and/or altered their behavior at the molecular level.
引用
收藏
页码:329 / +
页数:19
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