Taxonomic and genomic characterization of Sporosarcina cyprini sp. nov., moderately tolerant of Cr+6 and Cd+2 isolated from the gut of invasive fish Cyprinus carpio var. communis (Linn., 1758)

被引:3
|
作者
Bharti, Meghali [1 ]
Khurana, Himani [1 ]
Sharma, Monika [1 ]
Choksket, Stanzin [2 ]
Nagar, Shekhar [1 ,3 ]
Yadav, Sheetal [1 ]
Modeel, Sonakshi [1 ]
Korpole, Suresh [2 ]
Negi, Ram Krishan [1 ]
机构
[1] Univ Delhi, Dept Zool, Fish Mol Biol Lab, New Delhi 110007, India
[2] CSIR Inst Microbial Technol, Chandigarh 160036, India
[3] Univ Delhi, Deshbandhu Coll, Delhi 110019, India
关键词
Cyprinus carpio; Sporosarcina; Taxonomy; Yamuna; 16S rRNA gene; BACTERIUM; SEQUENCE; GENES; SOIL; PERFORMANCE; STRAINS;
D O I
10.1007/s10482-022-01794-w
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A Gram-stain-positive, motile, and rod-shaped bacterium, designated as strain MB25(T), was isolated from the gut of Cyprinus carpio from the highly polluted river Yamuna, India. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strain MB25(T) belonged to the genus Sporosarcina, sharing the highest sequence similarity with S. luteola Y1(T) (98.98%) and S. koreensis S-K12(T) (98.91%). Digital DNA-DNA hybridization and average nucleotide identity values of strain MB25(T) with strain Y1(T) and S-K12(T) were 18.9, 77.69, and 18.2, 76.80 respectively. Genome analysis of strain MB25(T) revealed its biotechnological properties such as tolerance to potent heavy metals, genes for the production of carbohydrate-active enzymes, antimicrobial compounds, and also degradation of aromatic compounds. The G + C content of strain MB25(T) genome was 45%. Growth observed at 10-40 degrees C (optimum, 28-30 degrees C), pH 6.0-8.5 (optimum pH 7.5-8.0); NaCl concentrations up to 6.0% (w/v). The dominant respiratory quinone was MK-7, cell wall peptidoglycan is of the A-4 type containing amino acids Lys-Glu and the major fatty acids are anteiso-C-11:0 and iso-C-15: 0. The major polar lipids of strain MB25(T) are diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. On the basis of phenotypic, chemotaxonomic, phylogenetic, and phylogenomic data, strain MB25(T) represents a novel species of the genus Sporosarcina, for which the name Sporosarcina cyprini sp. nov. is proposed. The type strain is MB25(T) (= MCC 4366( T) = JCM 34521( T) = CCM 9113( T)).
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页码:193 / 206
页数:14
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  • [1] Taxonomic and genomic characterization of Sporosarcina cyprini sp. nov., moderately tolerant of Cr+6 and Cd+2 isolated from the gut of invasive fish Cyprinus carpio var. communis (Linn., 1758)
    Meghali Bharti
    Himani Khurana
    Monika Sharma
    Stanzin Choksket
    Shekhar Nagar
    Sheetal Yadav
    Sonakshi Modeel
    Suresh Korpole
    Ram Krishan Negi
    Antonie van Leeuwenhoek, 2023, 116 : 193 - 206
  • [2] Salinicoccus cyprini sp. nov., isolated from the gut of mirror carp, Cyprinus carpio var. specularis
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    Choksket, Stanzin
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    Negi, Ram Krishan
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