The complete genome sequence of Stellaria aquatica virus A, a new member of the genus Alphacarmovirus, family Tombusviridae

被引：0

作者：

Gudeta, Workitu Firomsa ^{[1
,2
,3
]}

Kim, Se Eun ^{[1
]}

Seo, Han Kyu ^{[6
]}

Ahn, Jun Ki ^{[4
]}

Moon, Jae Sun ^{[1
,2
]}

Park, Yang Chan ^{[5
]}

机构：

[1] Korea Res Inst Biosci & Biotechnol, Plant Syst Engn Res Ctr, Daejeon 34141, South Korea

[2] Univ Sci & Technol UST, Biosyst & Bioengn Program, Daejeon 34113, South Korea

[3] Ethiopian Inst Agr Res EIAR, Holeta, Ethiopia

[4] Mat & Component Convergence R&D, Dept Ind Technol KITECH, Ansan 1588, South Korea

[5] NEXBIO Co Ltd, Daejeon, South Korea

[6] HK Genom Inc, Daejeon, South Korea

来源：

ARCHIVES OF VIROLOGY | 2023年 / 168卷 / 03期

关键词：

D O I：

10.1007/s00705-022-05651-z

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

A new member of the genus Alphacarmovirus was detected in Stellaria aquatica using high-throughput RNA sequencing analysis. The complete genome sequence of this new virus isolate, tentatively named "Stellaria aquatica virus A " (StAV-A), comprises 4,017 nucleotides with five predicted open reading frames (ORFs) and has a typical alphacarmovirus genome organization. Pairwise comparison of StAV-A with selected members of family Tombusviridae showed 44-58%, 32-64%, and 19-49% sequence identity for the overall nucleotide sequence, polymerase, and coat protein, respectively. Phylogenetic analysis of polymerase sequences places StAV-A alongside other members of the genus Alphacarmovirus in the family Tombusviridae.

引用

页数：5

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